Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3392.8 1777 100.0
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 3358.2 1807 98.0
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3314.6 1807 95.9
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3313.9 1807 96.7
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3303.8 1808 96.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 3166.3 1808 91.7
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2710.6 1809 80.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2634.8 1810 77.5
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2624.4 1811 77.6
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2417.1 1823 71.6
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2407.9 1821 71.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2320.0 1824 67.9
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2310.8 1818 68.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2306.6 1812 69.0
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2300.4 1825 68.6
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2291.9 1813 68.2
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2271.1 1803 68.1
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2261.5 1823 67.4
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2251.9 1745 70.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2249.9 1876 66.1
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2244.9 1819 68.6
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2244.5 1828 66.4
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2241.1 1813 66.8
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2232.6 1801 67.4
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2232.2 1814 66.8
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2217.6 1810 67.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2215.7 1700 70.9
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2204.5 1797 65.6
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2196.4 1817 64.7
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2189.8 1795 66.6
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2185.6 1824 65.7
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2174.8 1831 65.3
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2171.7 1827 65.9
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2148.6 1824 63.8
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2140.9 1836 63.4
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2138.2 1826 63.5
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2136.7 1875 61.6
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2124.7 1877 62.0
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2122.4 1822 63.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2116.3 1806 63.8
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2114.3 1806 64.1
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2105.9 1693 67.0
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2071.2 1802 62.0
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2068.1 1828 62.0
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2050.8 1875 60.2
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2048.5 1765 62.8
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2047.7 1696 64.1
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2039.2 1815 61.4
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2035.4 1816 60.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2030.8 1824 60.6
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2029.6 1858 60.4
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2028.8 1789 61.9
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2028.8 1825 60.9
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2026.9 1753 64.4
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2017.3 1856 60.2
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2013.0 1853 60.1
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2011.1 1772 60.4
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2010.0 1830 60.4
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2005.7 1765 61.6
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1994.9 1458 73.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1985.3 1863 59.0
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1985.3 1863 59.0
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1983.8 1560 68.5
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1983.4 1830 61.4
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1980.7 1841 59.5
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1980.3 1818 60.0
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1980.3 1868 59.0
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1975.3 1818 59.5
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1974.5 1828 59.9
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1972.6 1860 59.3
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1971.4 1842 59.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1970.3 1605 65.4
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1963.7 1818 60.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1959.5 1826 59.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1957.6 1865 58.6
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1957.6 1865 58.6
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1951.0 1861 58.8
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1949.1 1733 60.9
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1946.0 1499 69.4
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1934.5 1828 58.6
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1921.0 1820 58.6
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1913.3 1877 57.6
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1905.2 1686 61.4
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1855.9 1560 63.5
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1851.6 1875 56.9
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1810.8 1600 61.2
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1794.2 1534 63.2
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1749.9 1728 56.3
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1744.6 1671 58.3
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1666.0 1354 67.1
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1637.9 1581 56.5
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1568.5 1845 49.9
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1563.5 1661 52.9
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1406.7 1370 57.2
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1401.3 1817 46.0
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1349.7 1796 45.3
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1324.3 1780 44.8
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1277.3 1017 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1249.6 1740 43.0
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1223.0 1212 57.6
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1222.6 1007 66.5
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.0e-305 1052.4 1086 54.0
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.6e-288 996.5 1002 56.4
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.2e-279 966.8 1526 39.6
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.2e-270 936.0 792 63.4
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 9.3e-270 934.9 978 54.3
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 4.8e-250 869.4 657 70.8
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 9.4e-246 855.1 645 68.8
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.5e-203 714.9 888 47.1
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.7e-173 613.6 708 49.2
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.2e-170 604.7 503 63.8
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.9e-166 591.7 557 62.3
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 3.4e-163 580.9 437 68.4
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.4e-148 531.6 510 61.0
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.0e-143 516.2 502 58.2
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 9.1e-132 476.5 500 54.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.2e-131 476.1 532 52.6
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.1e-128 465.3 523 50.5
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 4.7e-128 464.2 423 61.7
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.1e-120 438.7 480 55.6
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.7e-117 429.1 545 50.8
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.8e-106 391.3 395 61.5
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.9e-90 338.6 349 51.9
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 6.8e-87 327.4 292 58.9
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.5e-86 326.2 265 66.0
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 7.5e-86 323.9 343 55.1
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.3e-85 320.5 282 60.3
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 5.4e-68 264.6 279 52.0
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 4.9e-61 241.5 1427 22.8
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.4e-46 192.2 164 64.6
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 4.5e-46 191.8 184 57.1
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 4.3e-41 175.3 392 31.1
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 9.6e-41 174.1 228 43.0
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-38 167.2 441 31.1
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 4.5e-38 165.2 120 70.0
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.5e-36 159.5 273 40.7
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 5.1e-34 151.8 162 48.8
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-30 140.6 98 72.4
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 2.6e-30 139.4 117 54.7
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.9e-28 133.3 96 71.9
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-27 130.6 97 70.1
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.3e-26 126.3 70 88.6
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.4e-23 116.3 197 40.6
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.9e-23 114.8 126 48.4
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.7e-21 110.2 78 67.9
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 1.4e-18 100.5 77 72.7
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 3.9e-18 99.0 78 65.4
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 5.7e-17 95.1 98 52.0
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.3e-16 94.0 88 64.8
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 2.8e-16 92.8 195 33.3
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.1e-15 90.9 88 64.8
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-15 90.5 85 57.6
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 5.3e-15 88.6 83 55.4
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 5.3e-15 88.6 83 55.4
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 5.3e-15 88.6 83 60.2
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.5e-14 87.0 265 30.9
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.0e-14 86.7 79 68.4
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.6e-14 86.3 59 72.9
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.5e-14 85.5 107 48.6
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 5.9e-14 85.1 106 49.1
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.3e-13 84.0 107 47.7
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-12 80.5 61 62.3
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 1.9e-12 80.1 124 40.3
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 9.4e-12 77.8 63 60.3
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.7e-11 76.3 109 44.0
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.1e-11 75.1 96 49.0
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 7.9e-11 74.7 70 58.6
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.0e-10 72.8 70 57.1
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.5e-09 70.5 153 32.0
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 2.2e-08 66.6 93 44.1
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 1.5e-06 60.5 91 44.0


User provided reference genes

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