Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1904.0 946 100.0
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1902.9 946 99.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1888.6 946 99.0
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1879.0 946 98.6
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1875.5 946 98.2
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1855.9 950 96.6
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1738.0 952 90.8
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1713.7 954 90.1
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1708.3 954 90.0
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1681.0 945 87.6
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1674.8 948 86.9
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1673.3 945 87.4
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1659.8 947 86.6
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1657.1 947 86.5
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1648.3 948 86.4
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1645.9 947 85.9
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1642.9 950 86.9
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1642.5 949 85.2
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1638.2 948 85.0
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1637.5 946 86.0
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1635.2 945 86.1
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1633.2 949 86.0
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1631.7 948 85.2
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1631.3 950 85.5
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1622.4 944 85.2
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1622.1 953 85.3
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1622.1 946 85.9
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1620.9 949 85.1
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1619.0 938 85.8
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1617.4 947 84.3
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1610.5 951 83.9
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1607.8 950 83.9
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1605.1 940 84.0
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1604.3 954 84.4
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1604.0 948 84.1
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1604.0 948 84.1
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1602.0 948 82.9
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1600.9 955 83.1
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1594.7 949 83.8
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1592.8 961 83.8
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1591.6 956 82.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1591.2 946 83.1
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1588.9 949 82.4
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1578.9 955 82.9
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1578.1 945 83.1
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1576.6 947 82.5
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1576.2 951 83.1
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 951 82.9
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 949 81.7
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1573.1 951 82.5
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1572.0 945 82.2
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1570.1 954 82.2
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1568.9 943 81.7
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 955 81.6
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1563.5 949 80.2
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 957 81.4
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 944 81.1
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 949 79.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 946 80.3
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 956 80.9
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 944 80.8
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1554.7 948 80.1
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 946 81.3
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 985 79.8
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1545.4 943 80.5
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1545.0 948 81.3
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1544.3 943 79.6
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1543.9 957 80.5
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 943 79.9
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 956 80.5
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1539.6 947 80.8
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1536.5 963 80.1
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1536.5 956 79.7
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1531.5 950 80.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 954 80.0
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1525.0 943 80.3
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1525.0 943 80.3
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1521.9 951 79.3
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 943 79.6
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1520.0 943 79.6
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 942 79.5
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 943 79.4
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 943 79.4
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1515.0 943 79.3
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1513.8 943 79.5
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 943 79.4
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 943 79.2
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1505.0 953 79.3
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1502.6 952 78.7
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1501.9 943 79.1
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1499.6 953 79.2
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 941 79.0
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 941 79.2
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1496.5 954 79.8
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 951 79.2
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 966 77.8
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 950 78.6
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1486.1 950 78.5
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 956 77.4
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 943 76.9
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1449.1 833 86.7
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1433.7 940 75.9
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1424.8 948 73.6
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1423.3 955 73.0
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1364.4 945 72.0
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1343.9 945 73.3
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1334.7 951 69.6
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1331.6 854 78.0
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1331.6 846 79.0
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1255.4 738 83.6
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1233.0 948 67.7
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1189.1 965 61.6
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1177.9 978 60.2
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1173.7 701 82.2
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1115.5 1016 56.6
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1102.4 666 82.3
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1091.3 941 59.7
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1085.5 648 83.2
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 4.6e-284 981.5 699 68.8
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 2.6e-226 789.6 758 52.9
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.5e-218 763.8 464 81.0
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.5e-186 657.5 442 72.9
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.7e-127 460.7 303 73.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.0e-110 405.6 1095 26.9
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 4.9e-108 396.7 635 37.8
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 4.7e-79 300.4 202 74.3
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.4e-75 287.0 209 71.8
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.4e-62 245.0 180 70.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 6.4e-52 210.3 300 43.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.2e-51 207.6 112 89.3
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.1e-46 193.0 121 76.9
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 7.6e-37 160.2 139 59.7
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.9e-36 158.3 201 45.8
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.7e-28 132.5 64 93.8
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.3e-16 91.7 80 63.8
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 6.7e-09 67.4 45 73.3
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 9.7e-08 63.5 99 38.4
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 3.7e-07 61.6 130 37.7


User provided reference genes

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