Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1713 Fragaria x ananassa HOM05D000104 ORTHO05D201773 4.6e-29 130.6 67 100.0
FAN12G2998 Fragaria x ananassa HOM05D000104 ORTHO05D210880 4.6e-29 130.6 67 100.0
FAN07G0774 Fragaria x ananassa HOM05D000104 ORTHO05D201390 3.9e-12 74.3 55 70.9
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 6.7e-12 73.6 51 76.5
FAN07G1640 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.7e-12 73.6 51 76.5
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.7e-12 73.6 51 76.5
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.7e-12 73.6 51 76.5
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.7e-12 73.6 51 76.5
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 6.7e-12 73.6 51 76.5
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 1.9e-11 72.0 51 74.5
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 1.9e-11 72.0 51 74.5
Cpa.g.sc16.94 Carica papaya HOM05D000104 ORTHO05D005604 4.3e-11 70.9 51 72.5
Ciclev10004115m.g Citrus clementina HOM05D000104 ORTHO05D005604 4.3e-11 70.9 51 72.5
Gohir.A09G233000 Gossypium hirsutum HOM05D000104 ORTHO05D005604 5.6e-11 70.5 51 74.5
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 5.6e-11 70.5 51 74.5
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 5.6e-11 70.5 51 74.5
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 7.4e-11 70.1 51 72.5
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 7.4e-11 70.1 51 72.5
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 7.4e-11 70.1 51 72.5
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 7.4e-11 70.1 51 72.5
SHI00290 Sapria himalayana HOM05D000104 ORTHO05D005604 7.4e-11 70.1 51 72.5
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 7.4e-11 70.1 51 70.6
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 9.6e-11 69.7 51 70.6
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 1.3e-10 69.3 51 74.5
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.6e-10 68.9 51 70.6
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 1.6e-10 68.9 51 70.6
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 1.6e-10 68.9 51 70.6
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 2.1e-10 68.6 51 68.6
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 2.1e-10 68.6 51 68.6
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 2.1e-10 68.6 51 68.6
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 2.1e-10 68.6 51 68.6
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 2.8e-10 68.2 51 70.6
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 2.8e-10 68.2 51 70.6
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 2.8e-10 68.2 50 72.0
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 2.8e-10 68.2 51 70.6
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 2.8e-10 68.2 51 70.6
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 70.6
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 3.7e-10 67.8 40 82.5
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 68.6
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 68.6
Hma1.2p1_0728F.1_g209240 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 70.6
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 70.6
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 68.6
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 68.6
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 3.7e-10 67.8 51 68.6
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 4.8e-10 67.4 51 66.7
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 4.8e-10 67.4 51 70.6
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 4.8e-10 67.4 51 70.6
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 4.8e-10 67.4 51 68.6
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 4.8e-10 67.4 51 66.7
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 4.8e-10 67.4 51 68.6
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 6.2e-10 67.0 51 68.6
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 6.2e-10 67.0 51 66.7
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 6.2e-10 67.0 51 66.7
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 6.2e-10 67.0 51 66.7
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 6.2e-10 67.0 51 66.7
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 6.2e-10 67.0 51 66.7
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 6.2e-10 67.0 51 68.6
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 8.2e-10 66.6 51 66.7
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 8.2e-10 66.6 51 68.6
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 8.2e-10 66.6 51 68.6
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 8.2e-10 66.6 51 68.6
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 8.2e-10 66.6 51 66.7
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 8.2e-10 66.6 51 66.7
vmacro04192 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 8.2e-10 66.6 51 68.6
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 68.6
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 68.6
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 64.7
AUR62040387 Chenopodium quinoa HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 68.6
AUR62042659 Chenopodium quinoa HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 68.6
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 66.7
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 66.7
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 68.6
TAR365G0333 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.1e-09 66.2 51 68.6
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 1.4e-09 65.9 58 63.8
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 1.4e-09 65.9 51 66.7
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 1.4e-09 65.9 51 66.7
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 1.4e-09 65.9 51 66.7
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 1.4e-09 65.9 51 66.7
Dinv36279 Davidia involucrata HOM05D000104 ORTHO05D005604 1.8e-09 65.5 51 66.7
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 1.8e-09 65.5 51 66.7
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 1.8e-09 65.5 51 64.7
Oeu007474.1 Olea europaea HOM05D000104 ORTHO05D005604 2.4e-09 65.1 51 66.7
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 2.4e-09 65.1 51 66.7
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 2.4e-09 65.1 51 66.7
SEGI_16038 Sequoiadendron giganteum HOM05D000104 ORTHO05D005604 2.4e-09 65.1 51 64.7
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 2.4e-09 65.1 51 64.7
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 2.4e-09 65.1 51 66.7
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 3.1e-09 64.7 51 64.7
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 3.1e-09 64.7 51 66.7
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 4.0e-09 64.3 51 66.7
Eucgr.E01764 Eucalyptus grandis HOM05D000104 ORTHO05D005604 4.0e-09 64.3 51 62.7
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 4.0e-09 64.3 51 64.7
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 4.0e-09 64.3 51 66.7
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 4.0e-09 64.3 51 66.7
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 4.0e-09 64.3 51 64.7
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 5.3e-09 63.9 51 62.7
Mapoly0171s0025 Marchantia polymorpha HOM05D000104 ORTHO05D005604 5.3e-09 63.9 51 64.7
CSS0040868 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 9.0e-09 63.2 51 64.7
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 9.0e-09 63.2 51 64.7
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 1.2e-08 62.8 51 64.7
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 1.2e-08 62.8 47 70.2
MBI19_g34714_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 1.5e-08 62.4 51 66.7
Ah.13g074430 Amaranthus hybridus HOM05D000104 ORTHO05D005604 2.0e-08 62.0 51 62.7
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 2.0e-08 62.0 51 62.7
SHI48772 Sapria himalayana HOM05D000024 ORTHO05D000007 2.0e-08 62.0 43 72.1
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 3.4e-08 61.2 51 62.7
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 7.6e-08 60.1 51 58.8
Pp3c14_90 Physcomitrium patens HOM05D000104 ORTHO05D005604 1.7e-07 58.9 51 58.8
SMO367G0295 Selaginella moellendorffii HOM05D000104 ORTHO05D005604 1.7e-07 58.9 51 60.8
CBR_g23157 Chara braunii HOM05D000104 ORTHO05D005604 2.5e-06 55.1 51 52.9


User provided reference genes

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