Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1906.3 946 100.0
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1877.4 946 98.3
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1876.3 946 98.2
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1870.9 946 98.1
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1856.6 946 97.5
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1833.5 950 95.5
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1721.8 952 89.8
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1696.0 954 89.1
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1689.5 954 88.9
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1659.8 945 86.6
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1656.0 945 86.7
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1656.0 948 86.0
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1637.9 947 85.4
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1635.5 948 85.4
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1630.9 947 85.4
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1626.3 947 84.8
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1626.3 950 86.0
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1621.3 949 84.0
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1619.8 946 85.2
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1618.2 948 83.9
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1615.9 949 85.0
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1613.2 945 85.0
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1612.8 949 84.3
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1609.0 950 84.2
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1603.6 945 84.1
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1603.2 946 84.7
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1602.8 938 84.9
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1602.8 949 84.2
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1601.3 953 84.3
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1596.6 950 83.3
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1591.2 951 82.9
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1591.2 940 83.3
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1590.5 948 83.2
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1590.5 948 83.2
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1590.5 949 82.5
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1589.3 951 82.9
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1586.6 954 83.5
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1582.8 955 82.2
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1580.5 960 82.0
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1578.1 949 82.0
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1577.4 950 82.9
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 961 82.7
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1572.0 955 82.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1569.7 946 81.9
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1562.7 951 82.1
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 945 82.0
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 951 82.2
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 951 82.2
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 947 81.4
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1558.9 954 81.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 945 81.6
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 943 80.9
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 955 80.8
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 949 80.4
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 957 80.9
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1549.3 944 80.5
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 957 80.5
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 946 80.8
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1543.9 946 79.6
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 941 80.6
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1541.2 985 79.3
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 948 79.0
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 946 79.4
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 957 80.1
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 945 79.5
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1533.5 940 80.2
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1533.5 943 79.1
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1532.7 948 80.8
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1531.5 943 79.0
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1526.9 956 79.2
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 956 79.8
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1523.8 945 79.9
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1523.1 963 79.3
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 954 79.5
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 950 79.5
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 951 78.9
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 943 79.3
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 943 79.3
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 943 78.9
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1505.3 943 78.9
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1504.2 942 79.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 943 78.7
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 943 78.7
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1500.3 943 78.6
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 943 78.6
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1495.7 953 78.7
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 943 78.6
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 952 78.2
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 943 78.5
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1489.6 943 78.3
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 953 78.6
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 941 78.4
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 941 78.2
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 951 78.4
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 950 78.2
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 954 78.6
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 966 77.1
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 950 78.0
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1468.0 956 76.7
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1457.6 945 76.3
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1428.7 833 85.6
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1425.6 940 75.3
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1411.7 948 73.0
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1410.2 955 72.6
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1354.0 945 71.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1335.5 945 72.8
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1323.9 846 78.6
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1322.4 951 69.0
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1318.9 852 77.2
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1251.1 735 83.4
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1214.1 948 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1177.5 965 60.9
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1169.5 701 81.7
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1166.0 978 59.4
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1102.8 1016 55.8
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1095.5 666 82.0
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1082.8 941 59.4
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1078.5 648 82.9
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 2.5e-282 975.7 699 68.4
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 9.8e-226 787.7 758 52.8
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 4.1e-216 755.7 464 80.4
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.1e-184 648.7 442 71.9
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.5e-125 452.6 303 72.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.0e-110 405.6 1095 26.8
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 4.1e-107 393.7 636 37.9
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 5.2e-78 297.0 202 73.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.6e-74 285.4 209 71.3
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.4e-61 241.1 180 68.9
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 7.1e-51 206.8 112 88.4
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 4.6e-50 204.1 300 42.3
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 6.2e-47 193.7 121 76.9
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 2.6e-37 161.8 139 60.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.9e-35 155.6 90 78.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.9e-28 131.7 64 92.2
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.3e-16 91.7 80 63.8
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 1.5e-08 66.2 45 71.1
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 6.3e-07 60.8 99 37.4
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 7.0e-06 57.4 130 36.9


User provided reference genes

Program Settings