Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1871.3 947 100.0
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1828.5 947 97.7
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1827.4 947 97.6
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1825.1 947 97.5
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1815.8 947 96.8
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1733.8 947 92.6
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1482.6 958 80.0
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1454.9 955 79.1
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1257.7 966 69.5
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1229.5 966 68.1
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1217.2 971 66.8
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1177.5 971 66.4
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1175.6 975 64.4
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1162.1 982 64.4
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1159.8 973 64.9
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1158.3 973 66.0
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1157.5 979 65.3
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1154.4 973 64.9
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1135.9 968 64.7
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1132.9 965 62.7
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1130.9 966 62.9
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1126.7 964 63.4
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1124.0 974 62.9
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1119.0 964 63.7
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1109.4 966 64.1
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1107.4 973 62.5
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1106.7 965 62.7
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1105.9 963 64.1
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1102.8 961 63.7
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1099.0 975 61.8
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1091.6 969 62.8
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1088.6 965 61.2
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1086.2 961 62.6
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 7.8e-311 1070.5 980 61.8
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.5e-306 1055.4 949 60.1
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 1.5e-303 1046.2 980 60.3
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 4.4e-303 1044.6 980 60.3
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 5.8e-303 1044.3 876 64.8
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 5.4e-301 1037.7 953 61.8
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 1.0e-299 1033.5 973 60.4
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 8.7e-299 1030.4 962 60.5
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 1.1e-298 1030.0 988 59.3
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 1.5e-295 1019.6 962 59.5
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 2.0e-295 1019.2 960 59.5
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 1.3e-294 1016.5 976 58.5
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 4.9e-294 1014.6 973 58.5
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 1.4e-293 1013.1 940 58.2
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 1.4e-293 1013.1 981 57.8
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 3.2e-293 1011.9 933 61.6
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 5.4e-293 1011.1 823 67.2
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 1.6e-292 1009.6 972 58.8
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 1.6e-292 1009.6 942 58.6
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 1.0e-291 1006.9 977 57.9
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 2.3e-291 1005.7 979 58.4
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 8.7e-291 1003.8 961 58.7
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 8.7e-291 1003.8 931 61.2
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 1.1e-290 1003.4 971 58.2
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 1.1e-290 1003.4 981 57.9
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.9e-290 1002.7 978 57.9
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 3.1e-288 995.3 978 58.4
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 5.3e-288 994.6 866 64.7
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 3.4e-287 991.9 969 56.1
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 3.4e-279 965.3 1000 54.5
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 3.0e-275 952.2 1010 56.2
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 1.1e-261 907.1 973 53.4
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 2.1e-260 902.9 946 57.0
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 9.7e-258 894.0 975 53.5
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 4.8e-257 891.7 711 68.1
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 2.9e-254 882.5 781 63.3
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 8.5e-254 880.9 925 55.6
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 1.4e-253 880.2 1017 50.6
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 7.2e-253 877.9 790 63.0
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.2e-252 877.1 949 55.1
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 1.1e-250 870.5 824 60.9
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.3e-250 869.0 950 54.7
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 4.4e-250 868.6 735 65.9
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 2.2e-249 866.3 986 52.6
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 1.5e-245 853.6 907 55.1
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 1.4e-243 847.0 817 59.7
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 9.7e-242 840.9 686 65.7
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 1.7e-241 840.1 815 59.0
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 1.1e-240 837.4 943 52.1
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 1.4e-240 837.0 797 58.1
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.7e-239 832.8 896 54.6
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 2.7e-239 832.8 789 59.7
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 1.6e-236 823.5 808 60.4
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 6.3e-233 811.6 597 71.7
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.8e-232 810.1 866 56.0
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 6.5e-230 801.6 777 58.8
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 3.3e-229 799.3 777 56.9
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 1.1e-224 784.3 710 61.0
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 5.0e-222 775.4 995 47.4
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 3.7e-217 759.2 708 58.8
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 6.4e-217 758.4 1056 46.6
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 3.9e-214 749.2 661 62.9
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 7.0e-208 728.4 967 47.8
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 2.3e-203 713.4 1022 46.2
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.4e-202 709.5 696 58.9
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 7.6e-194 681.8 768 51.3
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 1.7e-190 670.6 719 55.2
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 2.0e-178 630.6 1045 42.2
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 1.4e-168 597.8 917 40.6
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 4.9e-161 572.8 639 53.2
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 9.0e-155 552.0 939 38.3
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 4.6e-151 539.7 569 55.9
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 3.9e-150 536.6 1103 37.7
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 2.2e-145 520.8 719 42.7
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 7.0e-131 472.6 556 48.7
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.0e-102 379.0 426 53.5
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 6.4e-68 263.5 208 64.9
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.8e-57 228.8 299 46.5
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 1.5e-56 225.7 678 30.8
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 3.9e-49 201.1 347 32.9
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 1.9e-40 172.2 331 33.8
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.0e-33 149.8 570 27.9
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 3.3e-24 118.2 88 71.6
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 9.7e-24 116.7 53 98.1
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 1.7e-23 115.9 123 51.2
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.3e-20 106.3 75 72.0
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-16 90.5 130 42.3
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.8e-14 85.9 70 65.7
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 1.0e-12 80.1 102 43.1
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 5.0e-12 77.8 41 97.6
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-11 74.7 264 25.0
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.5e-08 66.2 38 86.8
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 6.3e-07 60.8 109 33.9
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 6.3e-07 60.8 104 33.7
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 8.3e-07 60.5 109 33.0
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 1.1e-06 60.1 139 30.9
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 1.1e-06 60.1 139 30.9
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 2.4e-06 58.9 109 32.1
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 5.4e-06 57.8 109 33.0
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 7.0e-06 57.4 121 27.3
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 7.0e-06 57.4 109 31.2
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 7.0e-06 57.4 156 26.3
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 9.1e-06 57.0 96 34.4
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 9.1e-06 57.0 96 34.4
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 9.1e-06 57.0 235 21.3


User provided reference genes

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