Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 7.0e-229 797.0 411 100.0
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 6.1e-217 757.3 438 91.3
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.4e-216 756.1 438 91.3
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 3.6e-177 625.2 449 76.6
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 2.0e-175 619.4 440 76.1
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.0e-166 590.5 439 72.7
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 2.5e-165 585.9 438 72.1
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 3.0e-163 578.9 438 72.1
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 5.7e-162 574.7 521 64.1
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 1.4e-160 570.1 362 84.0
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 7.6e-159 564.3 440 70.5
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.7e-158 563.1 438 69.9
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 5.1e-155 551.6 437 68.0
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 8.7e-155 550.8 438 70.1
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 2.8e-153 545.8 438 69.2
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 3.7e-153 545.4 438 67.1
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 8.2e-153 544.3 438 68.5
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 5.3e-152 541.6 436 68.1
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 6.9e-152 541.2 436 68.6
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.2e-151 540.4 436 68.6
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 2.6e-151 539.3 438 68.3
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 4.5e-151 538.5 436 68.1
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 1.1e-149 533.9 438 66.9
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 3.6e-148 528.9 444 66.7
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.6e-148 528.5 438 67.1
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.6e-148 528.5 436 67.7
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.4e-147 526.9 438 66.9
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 2.3e-147 526.2 442 66.1
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 5.7e-146 521.5 438 66.9
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 7.4e-146 521.2 438 65.3
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 9.7e-146 520.8 521 57.8
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 2.8e-145 519.2 440 67.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 1.4e-144 516.9 439 65.6
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 5.0e-142 508.4 540 56.3
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 8.5e-142 507.7 437 65.7
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 9.4e-141 504.2 445 65.2
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.2e-140 503.8 437 65.4
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 2.7e-140 502.7 560 54.5
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 4.7e-140 501.9 438 65.3
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 4.7e-140 501.9 437 63.2
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 1.0e-139 500.7 444 64.2
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 6.7e-139 498.0 354 73.4
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 9.7e-138 494.2 432 63.4
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 8.2e-137 491.1 438 63.5
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 8.2e-137 491.1 437 62.7
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 1.1e-136 490.7 426 64.3
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.1e-136 489.2 290 91.0
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 3.8e-134 482.3 437 63.6
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 5.5e-133 478.4 439 62.6
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 7.2e-133 478.0 437 62.7
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.2e-132 477.2 358 71.8
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 6.1e-132 474.9 437 61.6
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 1.4e-131 473.8 440 60.5
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 2.6e-130 469.5 426 62.4
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.3e-129 467.2 437 59.7
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 8.2e-129 464.5 438 61.0
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.4e-128 463.8 323 75.9
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 3.1e-128 462.6 399 63.2
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 3.5e-127 459.1 436 60.6
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 4.5e-127 458.8 435 60.7
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 4.5e-127 458.8 435 60.0
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 1.7e-126 456.8 360 68.9
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 3.8e-126 455.7 357 69.7
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 5.0e-126 455.3 447 60.6
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 5.5e-125 451.8 399 62.7
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 1.3e-121 440.7 402 61.4
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 3.7e-121 439.1 417 59.0
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 6.3e-121 438.3 437 59.0
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 4.1e-120 435.6 418 59.3
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 7.0e-120 434.9 374 63.6
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.6e-119 433.7 413 59.3
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 2.0e-119 433.3 357 68.6
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 2.2e-118 429.9 418 58.1
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 2.9e-118 429.5 440 58.4
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 3.8e-118 429.1 419 58.2
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 5.0e-118 428.7 384 62.0
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 1.5e-117 427.2 421 57.7
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 1.0e-115 421.0 358 64.2
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 8.8e-115 417.9 358 64.8
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 9.1e-112 407.9 364 63.5
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 1.3e-110 404.1 450 56.4
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.7e-110 403.7 427 57.8
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.9e-109 400.2 442 55.0
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 5.6e-109 398.7 364 62.1
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 1.2e-108 397.5 404 57.4
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.2e-108 397.5 436 55.7
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 6.8e-107 391.7 429 55.5
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 1.2e-106 391.0 360 62.5
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 3.4e-106 389.4 359 62.7
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 4.4e-106 389.0 357 61.1
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 3.7e-105 386.0 360 62.2
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 3.2e-104 382.9 439 52.6
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 6.6e-102 375.2 355 62.0
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 1.1e-101 374.4 444 50.5
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 4.3e-101 372.5 439 51.0
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 5.6e-101 372.1 432 53.9
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 2.0e-98 363.6 366 56.3
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 4.4e-98 362.5 319 61.8
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.2e-97 360.1 319 61.8
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 2.9e-97 359.8 446 48.7
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 4.6e-95 352.4 317 60.6
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 4.3e-93 345.9 441 50.1
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 5.6e-85 318.9 381 52.8
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 3.0e-78 296.6 409 45.0
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 9.6e-77 291.6 362 53.3
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 1.1e-75 288.1 312 52.9
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.4e-75 287.7 430 45.6
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.4e-75 287.7 420 44.8
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 3.0e-70 270.0 224 66.1
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 5.6e-69 265.8 421 40.1
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 2.7e-63 246.9 325 48.0
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.1e-59 235.0 221 61.5
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 2.6e-58 230.3 216 59.3
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 3.1e-43 180.3 316 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 9.3e-40 168.7 308 38.3
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 5.3e-35 152.9 321 37.4
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 7.4e-29 132.5 139 51.8
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.4e-27 128.3 63 100.0
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 6.9e-27 125.9 63 98.4
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 7.9e-23 112.5 63 85.7
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 8.8e-22 109.0 63 84.1
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 7.4e-21 105.9 63 82.5
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 7.4e-21 105.9 63 81.0
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 1.3e-20 105.1 63 79.4
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.7e-20 104.8 92 59.8
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 2.2e-20 104.4 56 91.1
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 2.8e-20 104.0 63 81.0
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 4.8e-20 103.2 63 81.0
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 6.3e-20 102.8 63 82.5
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 3.1e-19 100.5 63 76.2
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 3.1e-19 100.5 63 76.2
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.2e-18 98.6 63 74.6
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 3.8e-09 67.0 85 43.5
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 9.4e-08 62.4 30 96.7
Aqoxy7G02966 Aquilegia oxysepala HOM05D004161 ORTHO05D005770 8.8e-06 55.8 163 27.6


User provided reference genes

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