Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.4e-312 1072.8 541 100.0
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.4e-307 1056.2 541 98.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-300 1035.8 541 96.9
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.9e-299 1031.2 541 96.5
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.9e-298 1028.5 541 96.5
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.2e-298 1027.3 541 96.1
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-276 955.3 555 87.7
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 4.0e-224 781.6 557 74.5
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 6.4e-222 774.2 554 74.7
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-215 753.4 540 74.6
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 3.1e-200 702.2 561 66.8
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.9e-198 695.7 549 66.5
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 5.1e-195 684.9 552 65.2
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.8e-193 678.3 547 65.8
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.7e-190 669.8 566 64.7
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.2e-188 663.7 548 65.0
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.2e-188 663.7 542 63.3
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.3e-187 660.2 552 64.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 3.0e-187 659.1 547 64.5
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 3.0e-187 659.1 561 62.9
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 6.7e-187 657.9 561 63.1
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.9e-186 656.4 547 64.7
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.5e-186 656.0 571 63.4
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 5.7e-186 654.8 555 64.3
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.6e-185 653.3 551 63.9
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.6e-185 653.3 555 63.8
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 3.7e-185 652.1 555 64.0
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.4e-184 650.2 563 63.2
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 5.3e-184 648.3 565 60.9
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.2e-183 647.1 564 62.9
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.0e-182 644.0 395 85.6
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.3e-182 643.7 570 61.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.9e-181 639.8 557 61.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.5e-181 638.3 363 92.6
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 7.2e-181 637.9 545 64.4
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.3e-181 637.5 353 93.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.2e-180 637.1 551 62.6
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.7e-180 636.0 547 61.2
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 4.6e-180 635.2 563 62.3
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 6.1e-180 634.8 560 61.8
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.3e-179 632.9 564 61.7
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 2.3e-179 632.9 540 63.1
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.5e-178 630.2 563 61.5
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.5e-178 629.4 551 62.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 5.7e-178 628.2 556 62.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.3e-177 627.1 552 62.1
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.2e-177 626.3 557 61.4
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.8e-177 625.9 547 61.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.1e-176 624.0 547 61.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.1e-176 622.5 547 62.2
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.1e-176 622.5 550 62.2
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 5.3e-176 621.7 553 61.5
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 6.9e-176 621.3 547 61.6
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 6.9e-176 621.3 554 61.4
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 6.9e-176 621.3 547 61.1
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.6e-175 619.4 546 61.9
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 2.6e-175 619.4 547 60.9
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.0e-174 617.5 552 59.6
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.3e-174 617.1 563 60.2
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.2e-174 616.3 564 59.6
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 8.5e-174 614.4 562 58.7
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.4e-173 613.6 565 60.4
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.9e-173 613.2 546 62.1
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.5e-173 612.8 559 60.1
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 3.2e-173 612.5 540 61.7
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.2e-173 612.5 567 60.5
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.2e-173 612.5 552 59.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.5e-173 611.7 553 60.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 7.2e-173 611.3 556 59.4
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.2e-173 611.3 555 59.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.2e-172 610.5 545 60.9
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.6e-172 610.1 550 60.5
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.0e-171 607.4 543 61.5
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.8e-171 606.7 553 58.4
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.8e-171 606.7 552 60.7
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.8e-171 606.7 552 60.7
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.0e-171 605.9 560 58.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.6e-170 602.8 553 59.9
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.4e-170 602.1 546 59.0
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.3e-169 600.5 515 62.5
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.3e-169 600.5 565 58.9
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.2e-169 599.7 546 61.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 2.8e-169 599.4 558 59.1
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 4.8e-169 598.6 555 58.7
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 6.3e-169 598.2 557 60.0
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.4e-168 597.0 560 58.8
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.3e-168 595.1 563 58.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 6.9e-168 594.7 561 59.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.2e-167 594.0 558 58.6
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.0e-167 593.2 566 58.7
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.3e-166 590.5 542 59.4
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.2e-165 585.9 560 58.2
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 6.1e-164 581.6 544 59.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.0e-163 580.9 560 58.2
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.8e-163 580.1 546 58.4
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.8e-163 580.1 546 58.4
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.3e-163 579.7 546 58.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 5.2e-163 578.6 559 58.7
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.0e-162 576.6 557 57.1
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 2.6e-162 576.2 548 57.7
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 9.7e-162 574.3 549 58.1
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.4e-160 569.7 546 57.5
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 9.1e-160 567.8 546 57.3
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.6e-159 567.0 534 58.6
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.5e-157 559.7 554 54.7
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 6.5e-150 535.0 543 55.1
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 3.0e-147 526.2 544 53.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 4.2e-141 505.8 476 60.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.5e-138 497.3 522 53.1
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.7e-137 493.8 565 50.1
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 8.3e-137 491.5 542 51.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.7e-135 486.5 462 58.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.3e-134 484.2 590 48.1
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.3e-133 479.2 461 61.0
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.4e-130 469.5 553 50.8
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.2e-129 466.8 546 48.7
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 7.8e-127 458.4 543 49.0
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-126 457.2 468 59.0
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.8e-123 447.2 549 47.4
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.4e-122 443.0 517 50.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.9e-121 439.9 520 50.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 4.9e-121 439.1 540 48.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.9e-109 400.6 412 57.5
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 2.6e-106 390.2 427 52.7
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 2.4e-104 383.6 429 52.7
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 6.2e-100 369.0 338 59.5
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 2.7e-95 353.6 577 39.5
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.9e-93 347.4 597 39.7
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 6.4e-89 332.4 266 65.0
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.5e-85 321.2 203 78.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 8.4e-81 305.4 541 36.2
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 3.1e-75 287.0 566 36.0
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.5e-64 250.8 215 59.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.5e-64 250.8 370 43.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.2e-63 248.4 737 31.6
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 7.9e-63 245.7 149 74.5
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.7e-57 228.0 174 64.9
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-54 218.8 408 40.0
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.0e-54 217.2 391 40.7
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.1e-51 207.2 408 38.5
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 8.0e-47 192.6 395 39.0
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 2.1e-39 167.9 525 27.6
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.0e-37 161.4 553 28.0
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-32 145.2 247 43.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.8e-30 138.3 510 27.5
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.9e-25 120.9 82 67.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 6.1e-23 113.2 123 46.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.2e-21 109.0 263 33.8
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 9.8e-21 105.9 84 60.7
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 4.9e-20 103.6 60 75.0
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.2e-18 99.0 91 56.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 7.8e-18 96.3 82 68.3
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 6.6e-09 66.6 75 53.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 1.1e-08 65.9 40 72.5
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 3.1e-06 57.8 52 63.5


User provided reference genes

Program Settings