Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 6.6e-34 146.7 71 100.0
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 1.4e-31 139.0 71 94.4
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 6.8e-31 136.7 71 90.1
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 5.8e-30 133.7 71 88.7
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 5.8e-30 133.7 71 88.7
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 8.3e-29 129.8 71 85.9
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 1.1e-28 129.4 71 83.1
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 1.9e-28 128.6 69 88.4
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 3.2e-28 127.9 71 85.9
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 4.1e-28 127.5 71 84.5
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 4.1e-28 127.5 71 83.1
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 7.0e-28 126.7 71 81.7
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 1.2e-27 125.9 71 83.1
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 1.6e-27 125.6 71 80.3
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 2.7e-27 124.8 71 80.3
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 3.5e-27 124.4 70 80.0
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 3.5e-27 124.4 71 81.7
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 3.5e-27 124.4 71 84.5
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 3.5e-27 124.4 71 80.3
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 4.6e-27 124.0 70 78.6
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 6.0e-27 123.6 71 77.5
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 6.0e-27 123.6 71 77.5
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 6.0e-27 123.6 71 83.1
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 6.0e-27 123.6 71 83.1
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 1.0e-26 122.9 69 82.6
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 1.3e-26 122.5 71 83.1
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 1.3e-26 122.5 71 78.9
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.3e-26 122.5 59 100.0
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 1.3e-26 122.5 71 80.3
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 1.3e-26 122.5 71 80.3
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 1.7e-26 122.1 71 83.1
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 2.3e-26 121.7 70 75.7
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 2.3e-26 121.7 71 80.3
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 3.0e-26 121.3 71 78.9
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 3.9e-26 120.9 69 78.3
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 81.7
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 77.5
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 81.7
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 5.0e-26 120.6 71 77.5
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.0e-26 120.6 71 80.3
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.0e-26 120.6 71 80.3
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 5.0e-26 120.6 71 80.3
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 5.0e-26 120.6 71 78.9
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.1e-25 119.4 71 80.3
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.1e-25 119.4 71 76.1
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 1.5e-25 119.0 71 77.5
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 1.9e-25 118.6 69 79.7
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 2.5e-25 118.2 71 76.1
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.5e-25 118.2 71 80.3
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.3e-25 117.9 71 83.1
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.3e-25 117.9 71 83.1
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 4.3e-25 117.5 71 77.5
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 5.6e-25 117.1 71 78.9
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 9.5e-25 116.3 71 74.6
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 2.8e-24 114.8 71 74.6
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 4.7e-24 114.0 59 91.5
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 8.0e-24 113.2 69 73.9
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 8.0e-24 113.2 70 77.1
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 1.1e-23 112.8 71 80.3
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 1.1e-23 112.8 71 76.1
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 1.1e-23 112.8 71 76.1
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.1e-23 112.8 71 76.1
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 74.6
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 3.1e-23 111.3 71 74.6
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 4.0e-23 110.9 69 72.5
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 69.0
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 69.0
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 69.0
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 67.6
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 70.4
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 8.9e-23 109.8 70 71.4
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 3.4e-22 107.8 71 66.2
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 3.4e-22 107.8 71 71.8
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 4.4e-22 107.5 71 67.6
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 7.5e-22 106.7 71 70.4
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 7.5e-22 106.7 71 70.4
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 7.5e-22 106.7 71 67.6
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 1.7e-21 105.5 69 66.7
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.2e-21 105.1 57 84.2
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 3.7e-21 104.4 60 83.3
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 4.9e-21 104.0 59 83.1
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 8.3e-21 103.2 69 60.9
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 8.3e-21 103.2 69 71.0
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 8.3e-21 103.2 69 71.0
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.1e-20 102.8 66 68.2
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 1.4e-20 102.4 64 73.4
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 1.9e-20 102.1 64 73.4
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 2.4e-20 101.7 63 79.4
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 2.4e-20 101.7 59 78.0
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 2.4e-20 101.7 59 78.0
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 4.1e-20 100.9 71 67.6
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 4.6e-19 97.4 68 66.2
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 6.0e-19 97.1 70 68.6
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.0e-18 96.3 69 55.1
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 2.3e-18 95.1 63 74.6
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 2.3e-18 95.1 61 75.4
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 3.9e-18 94.4 70 64.3
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 3.9e-18 94.4 69 66.7
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 3.9e-18 94.4 63 69.8
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 6.6e-18 93.6 56 80.4
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 2.5e-17 91.7 71 57.7
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 2.5e-17 91.7 57 68.4
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 3.3e-17 91.3 73 61.6
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 5.6e-17 90.5 73 57.5
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 9.5e-17 89.7 54 74.1
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 9.5e-17 89.7 71 63.4
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.2e-16 89.4 67 67.2
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 3.6e-16 87.8 59 71.2
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 1.8e-15 85.5 69 58.0
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 8.9e-15 83.2 57 63.2
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.6e-14 81.6 61 63.9
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 3.4e-14 81.3 68 48.5
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.6e-11 72.4 83 48.2
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 1.3e-10 69.3 56 57.1
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 1.3e-10 69.3 40 72.5
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 6.6e-10 67.0 48 70.8
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 8.6e-10 66.6 70 40.0
C09p35140 Brassica napus HOM05D007086 ORTHO05D008927 7.6e-06 53.5 70 38.6
BolC9t56360H Brassica oleracea HOM05D007086 ORTHO05D008927 7.6e-06 53.5 70 38.6


User provided reference genes

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