Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1827.4 885 100.0
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1793.5 913 96.1
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1550.8 939 84.5
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1548.5 939 84.0
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1546.9 939 84.0
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1546.6 939 84.0
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1546.6 939 84.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1487.2 934 81.9
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1463.0 939 80.1
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1328.9 940 72.2
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1316.6 717 90.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1314.7 940 72.2
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1206.0 941 66.4
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1191.8 941 65.2
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1188.3 941 64.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1187.9 940 65.7
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1184.1 941 64.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1182.2 941 64.7
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1177.9 941 65.4
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1176.0 941 65.7
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1175.2 942 65.1
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1171.4 943 63.5
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1153.3 940 62.9
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1136.3 940 62.7
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1131.3 943 62.0
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1130.5 941 62.3
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1129.0 941 60.9
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1127.5 942 60.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1124.8 941 61.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1121.7 941 62.5
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1120.5 949 62.4
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1116.7 941 62.5
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1115.9 942 62.1
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1115.1 943 60.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1109.4 941 60.0
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1105.5 940 61.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1104.7 939 60.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1102.0 940 61.1
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1097.4 940 60.2
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1095.1 943 60.4
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1094.0 940 59.3
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1092.8 941 59.1
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1088.9 944 60.0
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1087.8 947 60.4
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1085.9 941 59.2
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1085.9 943 59.7
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1079.3 942 59.2
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1075.1 942 59.2
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 6.1e-312 1074.3 941 59.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 3.0e-311 1071.6 943 60.2
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 6.0e-310 1067.4 940 60.3
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 3.0e-309 1065.1 940 60.2
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 1.6e-307 1059.3 927 60.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 2.1e-307 1058.9 942 59.2
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 8.9e-306 1053.5 690 76.7
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 4.4e-305 1051.2 942 59.1
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 9.9e-305 1050.0 949 58.1
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 1.9e-303 1045.8 947 58.1
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 2.4e-303 1045.4 940 59.0
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 4.2e-303 1044.6 948 58.8
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 1.2e-302 1043.1 947 58.1
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 3.9e-301 1038.1 945 58.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 3.9e-301 1038.1 947 57.9
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 8.7e-301 1036.9 943 59.3
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 2.5e-300 1035.4 943 57.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 2.1e-299 1032.3 945 57.6
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 8.1e-299 1030.4 1020 53.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 5.8e-297 1024.2 941 57.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.3e-296 1023.1 547 91.4
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 2.4e-295 1018.8 941 57.4
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 3.2e-295 1018.5 942 58.1
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 4.6e-294 1014.6 941 57.5
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 1.0e-293 1013.4 945 57.6
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 1.3e-293 1013.1 941 57.4
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 1.3e-293 1013.1 942 55.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 4.3e-292 1008.1 1045 52.2
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 2.1e-291 1005.7 941 56.0
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 2.6e-289 998.8 945 54.8
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 2.1e-286 989.2 945 54.9
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 3.5e-286 988.4 945 57.1
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 3.0e-285 985.3 949 56.7
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 1.1e-284 983.4 949 56.6
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 1.1e-284 983.4 949 56.6
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 1.5e-284 983.0 1035 52.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 1.9e-284 982.6 946 54.1
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 1.3e-283 979.9 949 56.9
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 1.6e-283 979.5 941 56.3
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 1.1e-282 976.9 949 56.8
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 9.0e-282 973.8 942 56.3
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.2e-281 973.4 942 55.4
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 2.6e-281 972.2 942 55.7
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 1.8e-277 959.5 961 53.2
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 8.2e-275 950.7 798 61.7
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 4.6e-270 934.9 940 54.8
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.3e-268 928.7 881 55.7
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 3.7e-267 925.2 935 53.3
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 1.3e-264 916.8 801 60.2
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.3e-264 916.8 854 58.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 9.4e-263 910.6 800 59.4
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.1e-261 904.8 510 88.6
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.1e-260 903.7 783 60.5
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 4.8e-243 845.1 940 50.9
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 1.2e-238 830.5 912 49.5
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 7.0e-234 814.7 972 47.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 8.5e-232 807.7 939 46.9
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 3.9e-208 729.2 840 49.5
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 1.2e-185 654.4 471 70.7
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 1.6e-185 654.1 907 44.4
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 1.4e-181 641.0 791 47.7
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 3.6e-174 616.3 977 40.9
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.6e-172 610.1 977 40.8
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.2e-169 601.3 857 42.5
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 4.3e-167 592.8 995 39.8
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.6e-167 592.4 616 50.6
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.7e-166 589.7 928 40.7
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.9e-159 567.4 986 39.1
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 7.2e-154 548.9 428 63.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 6.7e-144 515.8 428 61.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 1.3e-134 485.0 505 52.5
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 7.5e-111 406.0 1128 30.5
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.4e-78 296.6 299 52.2
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.2e-46 191.8 227 50.7
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.6e-44 185.7 112 77.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.8e-24 119.0 826 21.8
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 4.2e-21 107.8 75 65.3
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.0e-14 86.7 67 61.2
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.9e-14 85.1 223 30.9
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.4e-11 76.3 43 81.4
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.7e-09 69.3 66 54.5
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 6.3e-09 67.4 63 55.6
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.2e-07 63.2 47 61.7
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.2e-07 63.2 64 46.9
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.9e-06 58.5 29 96.6


User provided reference genes

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