Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3162 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.1e-122 443.4 228 100.0
FvH4_7g26770 Fragaria vesca HOM05D002001 ORTHO05D004100 1.3e-120 436.4 228 98.7
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.9e-114 416.0 227 94.7
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 8.7e-96 354.0 232 83.6
Prupe.1G574900 Prunus persica HOM05D002001 ORTHO05D004100 6.9e-93 344.4 232 79.3
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 4.5e-92 341.7 232 81.0
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 2.2e-91 339.3 232 77.6
Prupe.I006200 Prunus persica HOM05D002001 ORTHO05D004100 5.5e-90 334.7 232 77.2
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 1.2e-89 333.6 232 77.6
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 5.1e-88 328.2 232 76.7
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.3e-86 323.6 232 75.9
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 2.8e-86 322.4 232 75.9
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.8e-86 322.4 232 75.9
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.8e-86 322.4 232 75.9
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.4e-85 319.3 232 75.0
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 2.0e-84 316.2 232 72.8
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 2.6e-84 315.8 232 72.4
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 3.4e-84 315.5 232 73.3
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 2.2e-83 312.8 232 72.0
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 2.2e-83 312.8 232 72.0
Haze_01808 Corylus avellana HOM05D002001 ORTHO05D004100 3.8e-83 312.0 232 71.6
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 1.9e-82 309.7 232 72.4
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 2.5e-82 309.3 232 71.6
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 3.2e-82 308.9 230 71.3
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 3.2e-82 308.9 230 72.2
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 5.5e-82 308.1 232 71.1
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 5.5e-82 308.1 232 71.1
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 5.5e-82 308.1 232 71.1
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 5.5e-82 308.1 232 71.6
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 2.1e-81 306.2 233 70.0
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 2.1e-81 306.2 233 70.4
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 2.7e-81 305.8 232 71.1
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 4.6e-81 305.1 232 73.7
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 4.6e-81 305.1 228 71.5
MELO3C027241.2 Cucumis melo HOM05D002001 ORTHO05D004100 6.1e-81 304.7 231 70.1
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 6.1e-81 304.7 231 70.1
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 7.9e-81 304.3 232 69.8
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 7.9e-81 304.3 232 70.7
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 1.3e-80 303.5 233 70.4
CsaV3_5G029980 Cucumis sativus L. HOM05D002001 ORTHO05D004100 1.3e-80 303.5 231 69.7
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 2.3e-80 302.8 233 69.5
Aa31LG2G9570 Aethionema arabicum HOM05D002001 ORTHO05D004100 3.0e-80 302.4 231 70.1
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 3.0e-80 302.4 233 69.5
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 3.9e-80 302.0 233 70.4
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 5.1e-80 301.6 232 69.0
Cpa.g.sc118.41 Carica papaya HOM05D002001 ORTHO05D004100 5.1e-80 301.6 232 72.4
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 5.1e-80 301.6 232 69.4
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 1.1e-79 300.4 232 69.4
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 1.1e-79 300.4 232 69.4
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 1.5e-79 300.1 233 70.4
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 1.5e-79 300.1 232 69.8
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 1.9e-79 299.7 232 69.0
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 1.9e-79 299.7 232 69.0
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 1.9e-79 299.7 235 70.2
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.3e-79 298.9 232 69.4
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 3.3e-79 298.9 233 69.5
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 4.3e-79 298.5 232 68.5
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 5.7e-79 298.1 233 70.0
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 7.4e-79 297.7 232 68.5
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 7.4e-79 297.7 233 70.0
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 7.4e-79 297.7 233 70.0
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 9.7e-79 297.4 233 69.1
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 1.3e-78 297.0 233 70.0
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 1.3e-78 297.0 233 70.0
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 1.3e-78 297.0 233 70.0
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 1.6e-78 296.6 232 67.7
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 2.8e-78 295.8 232 67.7
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 2.8e-78 295.8 232 69.4
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 6.3e-78 294.7 226 70.4
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.1e-77 293.9 232 68.1
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 1.1e-77 293.9 230 67.4
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 1.1e-77 293.9 230 68.7
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 1.4e-77 293.5 230 67.8
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 1.8e-77 293.1 232 68.1
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 2.4e-77 292.7 232 68.5
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 3.1e-77 292.4 230 67.4
Glyma.12G168900 Glycine max HOM05D002001 ORTHO05D004100 4.1e-77 292.0 230 67.8
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 5.3e-77 291.6 230 67.4
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 5.3e-77 291.6 230 67.8
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 5.3e-77 291.6 229 66.8
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 5.3e-77 291.6 231 65.4
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 6.9e-77 291.2 233 68.7
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 1.2e-76 290.4 232 66.4
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.5e-76 290.0 231 67.5
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 3.4e-76 288.9 232 69.4
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 3.4e-76 288.9 230 66.5
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 5.9e-76 288.1 231 68.0
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 7.7e-76 287.7 232 66.8
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 7.7e-76 287.7 232 67.2
Hma1.2p1_2522F.1_g323890 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 7.7e-76 287.7 232 67.7
Hma1.2p1_2522F.1_g323860 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 1.0e-75 287.3 232 67.2
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 1.0e-75 287.3 231 65.8
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.3e-75 287.0 232 66.4
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 5.0e-75 285.0 232 65.9
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 6.5e-75 284.6 229 68.1
CAN.G290.19 Capsicum annuum HOM05D002001 ORTHO05D004100 8.5e-75 284.3 232 65.1
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 8.5e-75 284.3 232 65.1
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 1.4e-74 283.5 231 66.2
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 4.2e-74 282.0 232 65.5
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 5.5e-74 281.6 212 70.3
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 1.2e-73 280.4 232 64.7
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 1.6e-73 280.0 231 66.7
CiPaw.06G144600 Carya illinoinensis HOM05D002001 ORTHO05D004100 2.7e-73 279.3 214 69.2
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 2.7e-73 279.3 232 65.5
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 4.6e-73 278.5 232 64.7
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 7.9e-73 277.7 232 65.1
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 2.3e-72 276.2 232 66.8
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 3.0e-72 275.8 228 64.5
Nitab4.5_0028330g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 2.0e-71 273.1 232 65.5
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 1.3e-70 270.4 228 63.2
FAN13G2793 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.2e-70 269.6 234 67.5
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 4.8e-70 268.5 232 64.7
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 4.8e-70 268.5 212 66.5
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 1.4e-69 266.9 229 64.2
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 5.3e-69 265.0 232 61.2
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 9.1e-69 264.2 229 64.2
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.2e-68 263.8 226 62.4
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 1.5e-68 263.5 233 62.7
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 3.4e-68 262.3 198 71.2
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 1.3e-67 260.4 231 62.8
Aqoxy7G01151 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 1.7e-67 260.0 232 62.1
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 1.7e-67 260.0 232 62.1
COL.COLO4_31914 Corchorus olitorius HOM05D002001 ORTHO05D004100 1.7e-67 260.0 202 69.3
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 1.7e-67 260.0 202 65.8
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 2.1e-65 253.1 232 60.8
Nitab4.5_0005079g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 7.9e-65 251.1 193 68.4
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 1.8e-64 250.0 231 59.7
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 1.8e-64 250.0 215 63.7
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 3.9e-64 248.8 232 60.8
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 1.5e-63 246.9 243 55.1
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 5.7e-63 245.0 233 56.7
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 2.2e-62 243.0 233 60.1
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 2.2e-62 243.0 230 60.0
BcaC02g10597 Brassica carinata HOM05D002001 ORTHO05D004100 2.5e-58 229.6 231 58.4
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 5.5e-58 228.4 233 57.1
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 6.1e-57 224.9 230 56.1
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 1.0e-56 224.2 233 54.9
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 3.3e-55 219.2 232 56.5
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 9.4e-50 201.1 138 77.5
SEGI_00225 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 3.4e-47 192.6 226 50.0
SEGI_19065 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 5.7e-47 191.8 226 50.4
FvH4_5g28761 Fragaria vesca HOM05D002001 ORTHO05D004100 2.2e-46 189.9 116 87.9
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 1.1e-45 187.6 158 65.2
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 1.7e-43 180.3 149 66.4
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 1.9e-42 176.8 230 43.5
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 1.9e-42 176.8 230 43.5
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 1.3e-38 164.1 230 43.9
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 1.4e-37 160.6 227 43.2
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 7.0e-37 158.3 229 43.7
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 1.3e-35 154.1 186 48.9
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 1.2e-33 147.5 233 40.3
SEGI_30549 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 2.0e-31 140.2 184 47.8
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 2.2e-30 136.7 232 36.6
CSS0036640 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 1.4e-29 134.0 118 61.0
BolC4t24247H Brassica oleracea HOM05D002001 ORTHO05D004100 2.7e-28 129.8 207 42.0
AagrBONN_evm.TU.Sc2ySwM_228.5774 Anthoceros agrestis HOM05D002001 ORTHO05D004100 5.9e-28 128.6 232 35.3
C05p50850 Brassica napus HOM05D002001 ORTHO05D004100 8.9e-24 114.8 154 46.1
C04p25620 Brassica napus HOM05D002001 ORTHO05D004100 1.5e-23 114.0 154 46.1
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 2.8e-17 93.2 240 29.2
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 2.6e-15 86.7 257 28.0
FvH4_5g28770 Fragaria vesca HOM05D002001 ORTHO05D004100 1.9e-13 80.5 61 73.8
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 1.7e-11 73.9 239 28.5
ECA246G0076 Erigeron canadensis HOM05D002001 ORTHO05D187146 2.3e-11 73.6 125 33.6
Medtr2g015350 Medicago truncatula HOM05D002001 ORTHO05D004100 2.3e-08 63.5 83 42.2
AagrBONN_evm.TU.Sc2ySwM_344.448 Anthoceros agrestis HOM05D002001 ORTHO05D004100 4.9e-06 55.8 110 31.8


User provided reference genes

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