Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1890.9 913 100.0
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1795.4 913 96.1
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1640.6 939 88.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1638.6 939 87.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1636.7 939 87.5
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1636.3 939 87.5
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1634.8 939 87.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1553.1 939 83.6
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1536.5 944 83.1
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1404.4 717 94.7
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1396.7 940 74.9
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1379.8 940 74.8
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1263.4 941 68.3
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1255.7 940 68.2
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1249.6 941 67.1
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1249.2 941 67.2
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1247.6 942 67.6
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1245.3 941 67.1
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1243.4 941 66.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1242.3 941 68.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1240.3 941 67.6
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1229.9 943 65.6
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1215.7 940 65.2
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1201.8 941 63.7
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1200.3 942 63.5
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1197.6 941 63.8
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1196.4 941 64.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1192.2 943 64.4
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1191.8 940 64.8
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1186.0 943 63.3
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1181.8 941 64.6
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1181.8 949 64.6
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1180.2 943 64.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1178.7 941 64.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1175.6 941 62.5
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1174.1 940 63.6
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1174.1 939 62.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1170.6 940 63.7
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1164.8 940 61.9
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1164.8 940 62.6
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1163.3 941 61.7
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1162.1 943 62.9
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1156.7 941 61.8
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1156.7 947 62.8
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1148.7 944 62.0
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1147.5 942 61.7
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1144.8 943 61.7
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1141.3 941 62.2
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1137.5 943 62.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1133.6 942 61.5
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1132.1 940 62.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1127.9 940 62.3
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1126.3 942 61.7
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1117.8 942 61.5
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1117.4 690 80.0
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1116.3 949 60.5
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1106.3 948 61.0
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1104.4 947 60.2
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1103.6 940 61.3
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1096.3 947 60.1
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1094.3 943 59.7
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1091.6 947 59.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1088.9 945 60.8
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1088.6 945 59.9
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1087.8 1020 55.9
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1084.7 945 59.5
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1083.2 943 61.0
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1075.8 941 58.4
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 3.1e-311 1071.6 945 59.7
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 5.6e-311 1070.8 941 59.4
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 6.2e-310 1067.4 941 59.0
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 3.1e-309 1065.1 942 57.1
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 7.5e-308 1060.4 941 59.1
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 1.9e-306 1055.8 945 56.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 4.1e-306 1054.7 941 58.9
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 9.2e-306 1053.5 942 59.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 3.5e-305 1051.6 1048 53.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 3.9e-304 1048.1 945 57.0
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 7.3e-303 1043.9 946 56.3
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 6.8e-301 1037.3 942 58.5
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.5e-300 1036.2 942 57.7
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 9.9e-300 1033.5 1035 53.8
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 1.3e-299 1033.1 945 58.7
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.2e-299 1032.3 547 92.0
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 6.4e-299 1030.8 942 57.9
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 1.1e-298 1030.0 949 58.3
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 4.1e-298 1028.1 949 58.2
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 4.1e-298 1028.1 949 58.2
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 5.4e-298 1027.7 941 57.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 4.6e-297 1024.6 961 55.5
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 6.0e-297 1024.2 949 58.5
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 5.1e-296 1021.1 949 58.4
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 4.3e-287 991.5 881 58.2
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 9.6e-287 990.3 935 55.4
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-286 989.9 510 94.7
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 2.4e-285 985.7 842 61.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 2.6e-284 982.2 940 56.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 5.8e-284 981.1 831 61.3
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 5.6e-279 964.5 836 60.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 4.0e-277 958.4 833 59.8
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.4e-261 906.7 783 60.7
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 1.0e-259 900.6 940 52.8
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 2.7e-249 865.9 939 48.7
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 4.7e-249 865.1 972 49.1
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 1.1e-237 827.4 940 48.3
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 4.4e-223 778.9 840 51.2
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 4.9e-206 722.2 471 75.8
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 8.6e-203 711.4 935 45.1
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 6.6e-195 685.3 830 48.2
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.1e-186 657.9 978 42.5
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.5e-186 657.5 977 42.3
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.4e-184 651.0 857 44.3
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 1.2e-180 637.9 997 41.4
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.3e-179 634.4 928 42.0
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.7e-174 617.5 987 41.0
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 8.1e-169 598.6 428 67.3
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.9e-168 595.5 616 50.6
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.6e-156 557.8 428 65.0
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.1e-136 490.0 505 52.9
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 5.2e-123 446.4 1128 31.6
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.1e-93 349.0 299 57.9
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 4.6e-47 194.1 227 51.1
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 8.1e-44 183.3 109 78.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 6.9e-27 127.1 852 21.8
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.7e-23 115.2 78 65.4
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 5.5e-16 90.9 68 61.8
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.7e-15 87.8 223 31.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.4e-11 76.3 43 81.4
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 7.7e-10 70.5 50 62.0
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.7e-09 69.3 66 54.5
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 5.0e-09 67.8 39 76.9
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.2e-07 63.2 64 46.9
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.0e-06 58.5 29 96.6


User provided reference genes

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