Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 2040.4 1025 100.0
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1990.3 1025 97.9
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1988.0 1025 97.8
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1985.7 1025 97.5
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1874.8 1031 92.0
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1830.8 947 97.7
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1522.7 1043 76.5
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1496.9 958 80.7
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1323.9 1043 67.6
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1286.6 1010 67.6
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1273.5 1012 66.7
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1229.2 1064 63.9
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1200.7 1004 65.3
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1198.3 1032 63.3
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1189.1 983 64.8
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1182.5 1055 63.1
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1165.6 1017 61.3
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1165.6 1026 63.0
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1164.1 1018 61.5
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1164.1 1008 63.5
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1161.7 1009 62.2
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1160.6 1042 61.3
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1160.2 1026 63.0
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1159.1 999 63.5
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1158.7 1025 62.2
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1154.4 1031 62.4
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1151.0 1006 62.2
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1148.3 1012 61.6
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1138.6 1043 61.3
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1135.9 993 62.2
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1134.0 1012 60.3
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1132.9 1002 62.8
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1126.3 1018 60.5
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 1104.7 1065 60.0
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 0.0e+00 1093.2 995 58.7
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1085.9 1021 60.1
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 1.4e-311 1072.8 922 63.1
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 1.2e-309 1066.6 1039 58.6
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 1.1e-307 1060.1 1024 58.7
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 3.3e-304 1048.5 988 57.7
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 9.7e-304 1047.0 1033 57.7
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 2.8e-303 1045.4 962 61.1
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 3.7e-303 1045.0 1008 57.8
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 1.1e-302 1043.5 952 62.3
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 1.1e-302 1043.5 985 57.4
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 6.9e-302 1040.8 1005 58.0
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 5.0e-300 1034.6 1024 57.1
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 6.5e-300 1034.2 1015 55.6
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 8.5e-300 1033.9 1024 56.7
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 1.1e-299 1033.5 1015 57.4
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 1.9e-299 1032.7 1017 57.0
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 2.1e-298 1029.2 1020 57.3
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 4.7e-298 1028.1 1005 57.7
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 7.9e-298 1027.3 1026 57.2
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 1.4e-297 1026.5 1015 57.1
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 2.3e-297 1025.8 1024 57.2
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.8e-294 1016.1 1031 56.6
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 2.4e-294 1015.8 823 67.3
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 7.0e-294 1014.2 931 61.7
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 7.7e-293 1010.7 935 61.6
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 1.2e-290 1003.4 977 58.9
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 4.0e-289 998.4 866 65.1
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 1.6e-285 986.5 1046 54.1
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 3.7e-279 965.3 1010 56.8
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 7.7e-269 931.0 1030 52.1
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 2.4e-262 909.4 971 54.7
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 3.5e-261 905.6 946 57.1
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 5.0e-260 901.7 1048 50.6
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 2.1e-258 896.3 711 68.4
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 6.8e-257 891.3 925 56.0
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 2.6e-256 889.4 781 63.6
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 9.8e-256 887.5 746 66.0
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.3e-255 887.1 950 55.1
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 1.4e-254 883.6 824 61.4
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 2.0e-253 879.8 942 54.4
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 4.6e-253 878.6 735 65.9
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 3.9e-252 875.5 986 52.9
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 3.4e-248 862.4 910 55.4
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 5.8e-248 861.7 940 55.1
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 9.2e-246 854.4 678 66.7
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.0e-244 849.4 896 56.1
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 3.0e-244 849.4 806 58.1
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 8.6e-244 847.8 770 61.4
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 1.9e-243 846.7 944 53.3
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 2.1e-242 843.2 851 59.0
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 8.1e-242 841.3 789 60.6
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 5.8e-240 835.1 823 55.9
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 6.6e-236 821.6 849 56.7
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 8.6e-236 821.2 597 72.2
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 3.1e-233 812.8 779 59.3
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 1.3e-231 807.4 734 61.2
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 1.5e-227 793.9 714 61.3
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 9.0e-225 784.6 993 48.2
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 2.7e-221 773.1 719 58.7
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 1.4e-217 760.8 1058 46.0
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 5.3e-209 732.3 964 47.5
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.9e-206 723.8 1015 46.7
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.9e-203 713.8 680 59.6
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 9.6e-203 711.4 839 48.7
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 3.1e-193 679.9 718 55.7
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 2.6e-179 633.6 1045 42.1
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 2.2e-170 604.0 916 41.0
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.4e-161 574.7 580 56.2
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 1.4e-156 558.1 952 38.1
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.4e-153 548.1 571 56.7
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 3.3e-150 537.0 1101 37.7
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.6e-144 518.1 719 42.4
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 1.1e-129 468.8 557 48.7
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.1e-102 379.0 426 53.5
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 7.7e-67 260.0 208 64.4
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.2e-61 241.9 184 67.4
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 7.2e-57 226.9 678 31.6
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 5.5e-49 200.7 347 33.1
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 2.1e-40 172.2 331 34.1
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.4e-36 159.5 560 29.3
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 6.8e-31 140.6 73 90.4
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 9.5e-25 120.2 88 71.6
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 3.1e-23 115.2 123 51.2
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 3.2e-20 105.1 81 69.1
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-15 87.4 130 41.5
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.3e-13 83.2 70 64.3
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 6.4e-13 80.9 104 45.2
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-13 80.9 262 27.1
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 5.4e-12 77.8 41 97.6
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.6e-08 66.2 38 86.8
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 6.2e-08 64.3 88 33.0
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.8e-07 62.8 159 27.0
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 1.8e-07 62.8 168 25.0
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 1.8e-07 62.8 168 25.0
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 1.8e-07 62.8 154 26.6
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 2.4e-07 62.4 150 26.0
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 2.4e-07 62.4 249 21.3
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 3.1e-07 62.0 150 25.3
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 3.1e-07 62.0 123 27.6
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 5.2e-07 61.2 146 25.3
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 6.8e-07 60.8 138 25.4
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 8.9e-07 60.5 138 25.4
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 1.5e-06 59.7 125 25.6
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 1.5e-06 59.7 125 25.6
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 1.5e-06 59.7 150 25.3
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 1.5e-06 59.7 126 24.6
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 1.5e-06 59.7 102 31.4
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.5e-06 59.7 92 29.3
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 1.5e-06 59.7 111 26.1
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 2.0e-06 59.3 133 27.1
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 2.0e-06 59.3 80 28.8
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 3.4e-06 58.5 108 29.6
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 3.4e-06 58.5 194 25.3
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 3.4e-06 58.5 197 22.3
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 5.8e-06 57.8 196 22.4
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 7.6e-06 57.4 95 25.3
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 9.9e-06 57.0 153 23.5
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 9.9e-06 57.0 105 23.8


User provided reference genes

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