Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.3e-97 357.5 212 100.0
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.6e-96 356.3 212 99.5
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.1e-96 355.9 212 99.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 4.8e-88 328.2 212 94.8
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.7e-82 309.7 212 89.2
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.1e-76 287.7 166 91.6
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.8e-72 275.8 211 83.4
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 2.4e-71 272.7 206 84.0
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 5.3e-71 271.6 206 83.0
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 5.3e-71 271.6 210 81.4
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.6e-70 269.2 209 82.3
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.6e-70 269.2 209 82.3
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 3.4e-70 268.9 212 79.7
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.0e-69 267.3 206 82.0
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.3e-69 266.9 209 81.3
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.3e-69 266.9 213 81.7
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.2e-69 266.2 213 80.8
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 4.9e-69 265.0 212 80.2
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.1e-68 263.8 209 78.9
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 3.2e-68 262.3 211 81.5
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 4.2e-68 261.9 210 77.1
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 5.5e-68 261.5 210 78.6
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 5.5e-68 261.5 211 80.6
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 9.3e-68 260.8 213 78.4
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 9.3e-68 260.8 209 80.4
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 9.3e-68 260.8 210 75.7
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.2e-67 260.4 207 80.2
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 2.7e-67 259.2 205 80.0
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.7e-67 259.2 206 79.6
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 2.7e-67 259.2 206 79.6
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 4.6e-67 258.5 212 78.3
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 4.6e-67 258.5 212 78.3
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 6.0e-67 258.1 210 80.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.0e-67 258.1 212 78.3
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.0e-66 257.3 213 78.9
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.0e-66 257.3 211 78.7
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.3e-66 256.1 205 77.6
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 3.0e-66 255.8 210 78.1
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 6.7e-66 254.6 204 78.4
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 8.7e-66 254.2 212 76.9
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.1e-65 253.8 212 75.9
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.1e-65 253.8 213 78.4
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 2.5e-65 252.7 250 68.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 5.7e-65 251.5 212 77.4
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 5.7e-65 251.5 207 75.8
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.6e-64 250.0 204 79.4
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 2.1e-64 249.6 209 77.5
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 3.7e-64 248.8 211 73.5
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 3.7e-64 248.8 212 75.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.8e-64 248.4 212 75.5
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 4.8e-64 248.4 205 79.0
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 6.2e-64 248.1 210 76.7
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 6.2e-64 248.1 207 78.7
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 6.2e-64 248.1 207 78.7
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 6.2e-64 248.1 213 77.5
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 8.2e-64 247.7 205 77.1
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 8.2e-64 247.7 207 78.3
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.1e-63 247.3 206 77.2
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-63 247.3 205 75.6
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.4e-63 246.9 205 79.0
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.4e-63 246.9 211 72.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.8e-63 246.5 204 78.4
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 3.1e-63 245.7 203 73.9
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 5.3e-63 245.0 205 77.1
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 5.3e-63 245.0 205 77.1
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.3e-63 245.0 207 79.2
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 6.9e-63 244.6 212 75.0
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 6.9e-63 244.6 211 74.9
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 9.0e-63 244.2 211 76.3
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 9.0e-63 244.2 204 77.0
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 9.0e-63 244.2 204 77.0
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 9.0e-63 244.2 211 73.5
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.2e-62 243.8 208 78.8
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.2e-62 243.8 204 76.5
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.2e-62 243.8 207 77.3
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.5e-62 243.4 204 78.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.5e-62 243.4 211 71.6
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.0e-62 243.0 204 76.5
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.4e-62 242.3 204 77.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 4.5e-62 241.9 211 72.0
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.0e-61 240.7 212 75.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.7e-61 240.0 210 73.3
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.9e-61 239.2 204 76.0
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.9e-61 239.2 206 76.7
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 5.0e-61 238.4 211 70.6
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 5.0e-61 238.4 169 87.6
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 5.0e-61 238.4 204 69.6
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 5.0e-61 238.4 208 73.1
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 6.5e-61 238.0 203 75.9
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-60 237.3 205 77.1
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.1e-60 237.3 200 77.5
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.9e-60 236.5 211 70.6
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 4.2e-60 235.3 208 72.1
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 5.5e-60 235.0 211 74.4
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.2e-60 234.6 161 90.1
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 3.5e-59 232.3 214 62.1
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 3.5e-59 232.3 211 69.7
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.5e-59 232.3 212 72.6
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.1e-59 231.5 204 75.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.5e-57 226.9 199 72.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.5e-57 226.1 273 58.2
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.3e-56 223.8 204 73.5
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 2.8e-56 222.6 204 71.1
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 3.7e-56 222.2 164 72.0
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 6.3e-56 221.5 205 68.8
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 3.1e-55 219.2 208 73.1
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.2e-52 209.1 206 68.9
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.5e-52 208.4 158 67.7
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.4e-50 203.8 155 67.1
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.2e-48 196.4 140 71.4
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 4.1e-47 192.2 107 88.8
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.1e-47 191.0 201 69.2
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.5e-46 190.3 213 59.6
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.4e-46 189.1 305 50.2
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 1.3e-45 187.2 207 56.5
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 5.0e-45 185.3 205 64.9
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 8.5e-45 184.5 203 63.1
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.7e-43 179.5 150 78.7
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 3.9e-42 175.6 146 65.1
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-40 170.6 155 65.8
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 9.1e-39 164.5 228 59.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.1e-35 153.3 123 83.7
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.1e-35 151.8 133 65.4
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.0e-34 149.4 219 59.8
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.5e-33 147.1 234 43.6
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.4e-31 139.8 228 51.3
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.6e-30 137.1 209 44.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 8.8e-26 121.3 286 44.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.8e-24 116.3 219 44.3
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.8e-23 113.6 158 45.6
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 1.3e-16 90.9 96 75.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 4.9e-16 89.0 211 37.9
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.1e-15 87.8 91 75.8
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 4.0e-10 69.3 45 82.2
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 6.8e-10 68.6 162 29.6


User provided reference genes

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