Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 6.6e-54 213.8 107 100.0
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 1.9e-53 212.2 107 98.1
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 3.3e-53 211.5 107 98.1
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 3.3e-53 211.5 107 98.1
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 7.3e-53 210.3 107 97.2
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 7.3e-53 210.3 107 97.2
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 1.2e-52 209.5 107 96.3
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 1.6e-52 209.1 107 96.3
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 3.6e-52 208.0 107 96.3
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 8.1e-52 206.8 107 95.3
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 8.1e-52 206.8 107 95.3
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 8.1e-52 206.8 107 94.4
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 1.1e-51 206.5 107 95.3
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 1.1e-51 206.5 107 95.3
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 1.1e-51 206.5 105 97.1
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 1.4e-51 206.1 107 94.4
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.8e-51 205.7 107 94.4
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 1.8e-51 205.7 107 95.3
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 3.1e-51 204.9 107 93.5
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 93.5
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 5.2e-51 204.1 107 92.5
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 6.8e-51 203.8 107 92.5
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 93.5
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 92.5
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 92.5
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 92.5
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 93.5
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 93.5
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 92.5
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 93.5
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 93.5
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 93.5
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 93.5
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 91.6
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 92.5
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 2.6e-50 201.8 107 90.7
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.6e-50 201.8 107 92.5
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 91.6
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 92.5
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 92.5
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 91.6
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 92.5
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 90.7
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 91.6
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 92.5
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 91.6
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 92.5
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 92.5
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 89.7
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 90.7
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 1.7e-49 199.1 106 90.6
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 1.7e-49 199.1 106 90.6
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 1.7e-49 199.1 106 90.6
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 91.6
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 90.7
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 89.7
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 90.7
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 4.9e-49 197.6 106 89.6
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 90.7
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 89.7
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 6.4e-49 197.2 105 90.5
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 89.7
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 6.4e-49 197.2 105 90.5
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 90.7
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 89.7
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 90.7
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 89.7
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 89.7
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 89.7
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 5.4e-48 194.1 117 85.5
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 88.8
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 88.8
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 88.8
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 88.8
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 86.9
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 87.9
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 86.9
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 2.7e-47 191.8 106 85.8
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 85.0
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 4.6e-47 191.0 107 87.9
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 6.0e-47 190.7 123 79.7
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 84.1
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.9
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.0
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 3.9e-46 188.0 133 74.4
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 6.6e-46 187.2 107 86.0
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 85.0
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 1.9e-45 185.7 104 86.5
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 83.2
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.3e-45 184.5 107 84.1
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.3e-45 184.5 107 84.1
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 83.2
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 83.2
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 82.2
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.6e-44 182.6 104 84.6
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 82.2
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 1.1e-43 179.9 106 79.2
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 1.8e-43 179.1 94 92.6
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 3.1e-43 178.3 105 81.0
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 8.9e-43 176.8 104 79.8
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 1.7e-41 172.6 107 81.3
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 2.9e-41 171.8 94 89.4
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 6.4e-41 170.6 107 75.7
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 9.2e-40 166.8 98 80.6
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 3.0e-38 161.8 107 74.8
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 8.6e-38 160.2 165 56.4
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 4.7e-36 154.5 83 90.4
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.8e-35 152.5 107 63.6
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 2.4e-35 152.1 107 73.8
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 4.0e-35 151.4 107 64.5
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 6.9e-35 150.6 107 64.5
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 7.6e-34 147.1 107 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.2e-33 145.6 107 60.7
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 2.7e-31 138.7 106 57.5
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.3e-30 136.3 71 91.5
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 5.3e-27 124.4 107 57.9
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.3e-25 119.8 107 57.0
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 1.9e-24 115.9 60 100.0
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 1.9e-24 115.9 93 63.4
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 1.9e-24 115.9 60 100.0
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 7.1e-24 114.0 69 85.5
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.2e-23 113.2 60 96.7
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 3.5e-23 111.7 66 83.3
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.8e-22 109.4 60 93.3
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 6.7e-22 107.5 105 46.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 1.1e-21 106.7 100 49.0
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 5.8e-18 94.4 78 62.8
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 5.8e-18 94.4 107 55.1
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 5.8e-18 94.4 107 55.1
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.2e-17 92.4 98 46.9
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 5.5e-16 87.8 62 74.2
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 4.6e-15 84.7 51 82.4
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 6.7e-14 80.9 100 37.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.4e-11 73.2 47 78.7
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 3.1e-11 72.0 92 35.9
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 4.9e-09 64.7 36 86.1
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 8.4e-09 63.9 34 76.5
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 4.6e-07 58.2 38 78.9
Zm00001eb072320 Zea mays HOM05D001366 ORTHO05D446550 5.1e-06 54.7 42 57.1


User provided reference genes

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