Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.0e-227 793.1 413 100.0
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 6.2e-193 677.6 487 77.0
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 1.5e-186 656.4 453 80.4
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 4.0e-184 648.3 443 81.9
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 1.0e-158 563.9 457 71.8
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 3.9e-118 429.1 463 57.9
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 3.0e-94 349.7 457 51.9
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 4.0e-91 339.3 478 46.4
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 8.9e-91 338.2 478 46.2
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 2.9e-89 333.2 478 48.3
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 4.9e-89 332.4 482 47.7
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 4.3e-85 319.3 470 45.7
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 2.1e-84 317.0 487 45.6
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 3.4e-82 309.7 392 46.7
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 2.9e-81 306.6 479 44.5
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 6.4e-81 305.4 471 43.5
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 5.4e-80 302.4 471 43.1
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 2.7e-79 300.1 487 45.8
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 3.5e-79 299.7 461 49.2
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 1.0e-78 298.1 478 42.7
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 6.6e-78 295.4 507 43.0
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 1.3e-76 291.2 483 43.9
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 2.8e-76 290.0 486 42.8
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 2.6e-74 283.5 491 38.9
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 1.3e-73 281.2 371 45.6
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 4.9e-73 279.3 368 45.1
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 1.4e-72 277.7 512 36.5
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 4.2e-72 276.2 463 44.1
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 9.3e-72 275.0 448 45.3
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 6.0e-71 272.3 365 46.3
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 3.0e-70 270.0 361 45.2
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 7.4e-69 265.4 352 46.9
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 8.1e-68 261.9 461 43.2
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 1.1e-67 261.5 478 43.7
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 1.8e-67 260.8 361 44.0
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 5.3e-67 259.2 476 41.8
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 5.3e-67 259.2 464 43.8
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 5.3e-67 259.2 546 39.4
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 9.0e-67 258.5 502 41.4
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 1.5e-66 257.7 476 37.2
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 2.0e-66 257.3 477 43.8
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 2.6e-66 256.9 336 45.2
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 2.6e-66 256.9 477 43.2
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 3.4e-66 256.5 340 43.8
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 1.0e-65 255.0 475 40.4
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.0e-65 255.0 474 36.5
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 1.0e-65 255.0 371 41.8
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 1.7e-65 254.2 482 40.2
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 2.2e-65 253.8 371 41.8
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 3.8e-65 253.1 473 43.3
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 6.5e-65 252.3 497 37.6
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.4e-64 251.1 350 43.4
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 4.2e-64 249.6 469 38.0
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 9.3e-64 248.4 468 40.8
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 1.6e-63 247.7 471 40.8
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 6.0e-63 245.7 554 38.1
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 6.0e-63 245.7 372 41.1
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 1.8e-62 244.2 372 42.2
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 5.1e-62 242.7 376 41.5
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 2.1e-60 237.3 475 39.6
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.4e-59 234.6 266 48.9
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 1.4e-59 234.6 350 43.1
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 2.4e-59 233.8 296 44.9
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 3.1e-59 233.4 369 40.7
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 3.4e-58 229.9 286 56.3
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 3.8e-57 226.5 496 37.9
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 1.4e-56 224.6 528 36.7
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 9.3e-56 221.9 269 46.8
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 1.6e-55 221.1 472 40.7
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 3.6e-55 219.9 337 41.8
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 2.3e-54 217.2 526 37.1
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 5.1e-54 216.1 438 41.6
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 5.1e-54 216.1 459 41.0
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 2.5e-53 213.8 519 32.0
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 3.3e-53 213.4 329 41.6
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 4.8e-52 209.5 261 46.7
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 1.4e-51 208.0 429 38.7
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 1.4e-51 208.0 438 38.1
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 6.9e-51 205.7 447 37.1
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 6.9e-51 205.7 355 38.3
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 1.5e-50 204.5 252 46.8
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 3.4e-50 203.4 448 40.4
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 1.1e-48 198.4 468 34.4
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 9.4e-48 195.3 453 37.3
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 2.1e-47 194.1 448 34.4
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 8.2e-44 182.2 365 35.3
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 4.5e-42 176.4 271 42.8
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 9.4e-40 168.7 432 36.6
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.0e-38 165.2 289 41.2
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 8.2e-36 155.6 203 47.3
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 1.0e-33 148.7 241 40.2
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.1e-32 145.2 158 51.9
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 1.1e-32 145.2 130 60.8
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 1.4e-30 138.3 303 31.4
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 1.8e-30 137.9 269 34.2
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 1.3e-28 131.7 276 34.4
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 4.1e-27 126.7 216 39.8
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 3.5e-26 123.6 304 31.2
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.0e-25 122.1 216 39.8
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 4.7e-23 113.2 281 39.5
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.7e-21 106.3 103 51.5
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 1.8e-19 101.3 120 47.5
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 4.0e-14 83.6 104 40.4
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 5.4e-11 73.2 112 38.4
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 9.2e-11 72.4 75 50.7
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 1.6e-10 71.6 84 51.2
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 9.5e-08 62.4 118 33.9
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 2.1e-07 61.2 134 32.1
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 4.7e-07 60.1 141 34.0
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.7e-07 60.1 131 30.5
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.7e-07 60.1 131 31.3
Actinidia10880 Actinidia chinensis HOM05D005384 ORTHO05D006477 6.1e-07 59.7 140 30.7
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 8.0e-07 59.3 134 36.6
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 8.0e-07 59.3 103 36.9
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 1.0e-06 58.9 131 31.3
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 1.4e-06 58.5 193 28.5
CAN.G572.37 Capsicum annuum HOM05D005384 ORTHO05D006477 1.4e-06 58.5 114 38.6
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 1.4e-06 58.5 167 32.3
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 1.4e-06 58.5 145 31.7
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.4e-06 58.5 115 40.9
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 1.4e-06 58.5 234 28.6
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 1.8e-06 58.2 161 32.9
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 1.8e-06 58.2 193 28.5
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 1.8e-06 58.2 168 31.5
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 1.8e-06 58.2 129 31.8
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 3.0e-06 57.4 158 34.2
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 3.0e-06 57.4 179 31.3
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 4.0e-06 57.0 141 34.0
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 4.0e-06 57.0 138 33.3
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 6.8e-06 56.2 208 26.9
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 6.8e-06 56.2 151 31.8
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 6.8e-06 56.2 151 31.8
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 6.8e-06 56.2 169 30.8
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 6.8e-06 56.2 140 30.0
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 6.8e-06 56.2 183 27.9
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 8.9e-06 55.8 156 30.1
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 8.9e-06 55.8 156 30.1
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 8.9e-06 55.8 156 30.1
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 8.9e-06 55.8 129 31.0
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 8.9e-06 55.8 214 26.6
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 8.9e-06 55.8 158 31.0
Peaxi162Scf00084g00818 Petunia axillaris HOM05D005384 ORTHO05D006477 8.9e-06 55.8 123 32.5
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 8.9e-06 55.8 153 34.6


User provided reference genes

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