Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3437.1 1808 100.0
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3393.2 1808 97.9
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3389.4 1808 98.7
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 3377.8 1808 98.1
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 3301.5 1808 96.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 3236.4 1809 93.5
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2764.9 1810 81.4
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2697.2 1811 78.9
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2684.8 1812 79.0
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2473.7 1823 72.7
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2456.0 1822 72.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2379.4 1825 69.3
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2368.6 1819 69.6
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2355.9 1813 70.0
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2351.6 1816 69.9
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2351.2 1814 69.5
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2336.6 1804 69.6
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2317.0 1826 68.4
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2308.5 1746 71.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2306.2 1876 67.3
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2297.3 1827 67.5
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2296.9 1816 68.2
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2296.9 1816 69.5
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2282.7 1817 68.1
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2278.1 1701 72.2
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2276.1 1807 68.5
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2271.1 1807 68.2
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2246.1 1803 66.0
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2239.5 1828 67.6
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2238.4 1816 65.4
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2229.1 1826 66.5
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2228.4 1796 67.5
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2213.7 1832 66.2
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2201.8 1825 65.0
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2181.8 1834 64.3
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2177.5 1876 62.5
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2176.0 1827 64.3
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2169.8 1823 64.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2167.5 1811 64.8
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2165.2 1891 62.5
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2159.4 1812 65.1
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2148.2 1694 68.1
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2121.3 1803 62.7
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2117.8 1821 63.2
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2105.5 1766 63.6
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2095.5 1697 65.2
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2090.1 1816 62.5
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2087.4 1875 61.0
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2078.9 1828 61.9
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2078.5 1817 61.0
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2076.6 1754 65.4
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2074.7 1826 61.4
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2073.9 1789 62.7
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2063.9 1859 61.1
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2059.6 1857 61.1
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2057.3 1768 62.4
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 2056.2 1458 75.2
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2052.7 1854 60.8
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2051.2 1831 61.4
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2049.2 1773 61.1
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2042.7 1560 69.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2032.3 1606 66.6
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2029.6 1892 59.7
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2028.8 1831 62.4
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2025.4 1817 60.1
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2025.0 1821 60.5
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2024.2 1864 59.7
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2024.2 1864 59.7
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2022.7 1871 59.8
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2016.9 1854 60.3
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2016.5 1831 60.6
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2015.0 1842 59.8
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2013.0 1819 60.8
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2004.9 1832 60.0
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2000.7 1866 59.6
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2000.7 1866 59.6
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1996.9 1734 61.8
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1994.2 1866 59.9
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1991.9 1499 70.2
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1981.8 1830 59.3
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1972.6 1834 59.5
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1959.5 1895 58.2
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1949.9 1687 62.3
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1903.3 1892 57.5
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1899.0 1563 64.3
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1869.7 1600 62.5
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1847.0 1534 64.4
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1791.5 1725 57.4
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1788.5 1672 59.1
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1720.7 1350 68.7
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1671.8 1583 57.3
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1620.9 1847 51.1
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1613.2 1661 53.9
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1451.0 1371 58.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1437.9 1824 46.7
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1394.4 1792 46.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1362.8 1779 45.2
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1286.9 1018 66.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1283.9 1741 43.4
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1276.5 1007 68.7
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1231.5 1216 57.7
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.1e-310 1070.8 1087 54.5
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.1e-302 1044.3 1002 58.2
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 5.9e-288 995.3 1526 39.8
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.6e-285 987.3 978 56.5
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.0e-267 927.2 793 62.8
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 5.4e-249 865.9 658 70.5
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 9.2e-249 865.1 645 68.5
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.1e-200 704.5 891 46.8
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.0e-182 644.8 503 66.6
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.8e-170 604.0 724 48.2
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 6.5e-170 603.2 563 62.7
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 2.0e-163 581.6 437 68.6
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.8e-148 531.9 510 60.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 2.9e-141 508.1 502 57.6
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.9e-137 495.4 523 52.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.1e-132 479.6 557 51.3
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 8.6e-130 469.9 500 53.6
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.4e-126 458.0 424 61.6
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.2e-120 439.5 480 55.4
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 9.3e-116 423.3 545 50.1
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.3e-106 392.1 395 62.3
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.9e-99 367.1 349 55.6
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 2.3e-98 365.5 265 71.7
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.6e-91 341.3 323 56.7
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.1e-90 337.8 282 61.7
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.6e-83 316.2 368 51.4
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 3.2e-68 265.4 1575 22.7
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.4e-66 260.0 280 52.1
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.0e-46 193.0 184 57.1
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 3.5e-46 192.2 420 31.9
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.3e-45 190.3 158 67.1
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 4.9e-40 171.8 229 42.8
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.0e-38 166.4 441 31.3
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 5.9e-38 164.9 120 69.2
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.4e-34 153.7 273 39.9
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 5.7e-33 148.3 163 49.1
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 2.7e-30 139.4 117 53.8
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 4.6e-30 138.7 98 72.4
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 5.6e-28 131.7 96 71.9
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.1e-27 129.8 99 66.7
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 3.6e-27 129.0 97 70.1
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.3e-26 126.3 70 88.6
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 4.1e-23 115.5 126 48.4
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.0e-22 113.2 198 40.9
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 6.0e-22 111.7 112 54.5
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.1e-20 107.5 78 66.7
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.3e-20 105.9 90 61.1
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 2.3e-18 99.8 95 56.8
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 2.3e-18 99.8 80 71.2
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 6.8e-18 98.2 78 64.1
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.3e-16 94.0 88 64.8
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 1.3e-16 94.0 195 34.4
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 8.3e-16 91.3 87 62.1
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.4e-15 90.5 269 31.2
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 5.4e-15 88.6 83 60.2
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.7e-14 86.3 78 65.4
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.7e-14 86.3 48 85.4
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.7e-14 86.3 59 72.9
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 7.8e-14 84.7 48 83.3
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 5.1e-13 82.0 106 48.1
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 5.6e-12 78.6 124 40.3
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.2e-11 77.4 59 62.7
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.8e-11 76.3 109 44.0
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 3.6e-11 75.9 48 77.1
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.2e-11 75.1 96 49.0
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.4e-10 73.9 70 58.6
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 5.2e-10 72.0 70 57.1
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.2e-09 70.9 153 32.0
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 1.1e-07 64.3 93 43.0
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 2.1e-06 60.1 91 44.0


User provided reference genes

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