Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-105 384.4 201 100.0
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-105 384.4 201 100.0
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.2e-104 383.3 201 99.5
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.2e-104 383.3 201 99.5
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.5e-104 382.9 201 96.0
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.5e-104 381.3 201 99.5
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.2e-103 379.0 201 99.0
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 8.2e-98 360.5 201 93.5
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 1.4e-92 343.2 202 88.1
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 3.9e-92 341.7 201 89.6
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 3.3e-91 338.6 201 89.1
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 7.4e-91 337.4 200 82.0
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 4.8e-90 334.7 199 82.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.1e-89 332.0 200 84.0
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 4.1e-89 331.6 200 81.0
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.0e-88 329.3 200 80.0
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 2.0e-88 329.3 200 83.5
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 7.7e-88 327.4 200 81.5
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.0e-87 327.0 200 82.0
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 1.0e-87 327.0 200 78.5
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 8.5e-87 323.9 200 77.5
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.1e-86 323.6 199 79.4
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 4.2e-86 321.6 200 80.5
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 7.2e-86 320.9 200 80.0
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 7.2e-86 320.9 200 77.5
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 9.4e-86 320.5 200 77.5
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.6e-85 319.7 200 77.0
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.6e-85 319.7 200 80.0
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 1.6e-85 319.7 200 78.0
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.6e-85 319.7 200 78.5
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 2.7e-85 318.9 201 77.1
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 4.7e-85 318.2 200 77.5
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.7e-85 318.2 201 79.6
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 4.7e-85 318.2 200 78.0
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 6.1e-85 317.8 200 77.0
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.1e-85 317.8 201 79.1
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 6.1e-85 317.8 200 77.5
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 6.1e-85 317.8 199 80.4
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 8.0e-85 317.4 201 79.6
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 1.4e-84 316.6 200 78.0
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.4e-84 316.6 199 76.4
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.4e-84 316.6 200 78.0
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 2.3e-84 315.8 200 79.5
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 2.3e-84 315.8 200 79.5
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 5.2e-84 314.7 200 76.5
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 5.2e-84 314.7 200 76.5
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 5.2e-84 314.7 200 76.5
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 5.2e-84 314.7 200 78.0
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 8.8e-84 313.9 200 76.5
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 1.1e-83 313.5 200 80.0
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 1.1e-83 313.5 199 76.9
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.1e-83 313.5 200 75.0
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.5e-83 313.2 199 77.4
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 1.5e-83 313.2 200 75.5
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.5e-83 313.2 202 79.2
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 2.0e-83 312.8 199 77.4
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 2.0e-83 312.8 200 75.0
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 3.3e-83 312.0 202 76.2
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 3.3e-83 312.0 200 78.0
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 4.4e-83 311.6 200 76.0
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 4.4e-83 311.6 200 76.0
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 5.7e-83 311.2 200 74.0
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 5.7e-83 311.2 200 75.0
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 7.4e-83 310.8 200 76.5
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 9.7e-83 310.5 200 75.0
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 9.7e-83 310.5 200 73.5
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 1.3e-82 310.1 200 74.0
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.7e-82 309.7 200 74.5
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 2.2e-82 309.3 200 73.5
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.8e-82 308.9 200 79.0
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 2.8e-82 308.9 200 74.5
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 3.7e-82 308.5 201 80.1
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 3.7e-82 308.5 200 74.5
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.1e-81 307.0 200 73.5
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 4.1e-81 305.1 200 75.5
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 5.3e-81 304.7 200 72.0
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 7.0e-81 304.3 200 75.0
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 7.0e-81 304.3 200 74.0
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.2e-80 303.5 200 74.5
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 2.0e-80 302.8 200 73.0
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 3.5e-80 302.0 199 77.9
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 3.5e-80 302.0 199 73.4
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 4.5e-80 301.6 200 73.5
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 4.5e-80 301.6 204 79.4
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 5.9e-80 301.2 198 72.2
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 7.7e-80 300.8 200 75.5
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 1.0e-79 300.4 206 78.2
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 1.0e-79 300.4 205 77.1
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 1.3e-79 300.1 201 76.1
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 1.3e-79 300.1 199 75.4
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 1.7e-79 299.7 202 74.3
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.7e-79 299.7 200 73.0
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 2.2e-79 299.3 202 75.2
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.2e-79 299.3 200 73.5
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 6.5e-79 297.7 199 71.9
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.1e-78 297.0 202 74.8
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 1.5e-78 296.6 204 78.9
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.9e-78 296.2 200 73.0
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.9e-78 296.2 204 78.4
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 2.5e-78 295.8 200 75.0
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 3.2e-78 295.4 200 72.5
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.2e-77 293.5 204 74.5
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.2e-77 293.5 199 73.4
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 1.2e-77 293.5 204 78.4
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 6.1e-77 291.2 204 74.5
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 6.1e-77 291.2 204 74.5
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.0e-76 290.4 197 73.1
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 1.4e-76 290.0 204 72.1
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 1.8e-76 289.7 204 74.0
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 1.8e-76 289.7 204 74.0
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 1.8e-76 289.7 201 74.6
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 1.8e-76 289.7 201 73.6
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 4.0e-76 288.5 204 72.1
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 4.0e-76 288.5 199 71.9
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.5e-75 286.6 203 70.9
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 1.5e-75 286.6 199 70.9
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 1.5e-75 286.6 200 70.0
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 2.6e-75 285.8 201 73.6
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 4.4e-75 285.0 200 72.5
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.7e-74 283.1 199 67.8
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.7e-74 283.1 204 70.1
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 4.8e-74 281.6 203 67.5
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 1.4e-73 280.0 199 66.3
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.8e-73 279.6 200 72.0
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 3.1e-73 278.9 199 67.8
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 5.3e-73 278.1 198 66.7
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 7.0e-73 277.7 205 69.3
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 7.0e-73 277.7 205 69.3
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 9.1e-73 277.3 205 69.3
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 2.7e-72 275.8 200 69.0
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 5.9e-72 274.6 202 70.8
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 5.9e-72 274.6 205 68.8
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 3.8e-71 271.9 201 66.2
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 6.5e-71 271.2 200 66.5
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 6.5e-71 271.2 200 68.0
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 1.2e-69 266.9 192 67.7
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 4.0e-68 261.9 193 71.5
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.5e-67 260.0 200 65.0
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 7.5e-67 257.7 192 65.1
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 9.8e-67 257.3 203 59.6
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 1.3e-66 256.9 199 63.8
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 4.8e-66 255.0 200 66.5
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.3e-66 254.6 131 100.0
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 1.1e-65 253.8 161 85.1
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 5.0e-63 245.0 198 66.2
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 7.0e-57 224.6 133 84.2
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 1.2e-56 223.8 200 61.5
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.5e-56 222.2 200 61.0
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 2.9e-55 219.2 185 64.3
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 1.5e-51 206.8 118 89.0
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 2.2e-50 203.0 166 60.2
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 3.6e-45 185.7 136 71.3
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 3.7e-42 175.6 243 39.5
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 1.3e-39 167.2 125 68.0
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 1.9e-38 163.3 211 48.3
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 4.0e-36 155.6 99 74.7
CAN.G97.8 Capsicum annuum HOM05D003093 ORTHO05D018860 5.8e-35 151.8 113 67.3
CAN.G28.18 Capsicum annuum HOM05D003093 ORTHO05D004301 7.1e-33 144.8 136 61.8
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 1.7e-31 140.2 122 65.6
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 8.6e-31 137.9 81 87.7
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 4.9e-26 122.1 170 41.8
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 1.9e-25 120.2 187 37.4
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.7e-24 116.3 74 82.4
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 6.0e-24 115.2 154 40.9
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 4.7e-21 105.5 212 30.2
Aqoxy2G01568 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 8.1e-21 104.8 74 79.7
unitig_88.g27762 Utricularia gibba HOM05D003093 ORTHO05D004301 1.7e-18 97.1 87 64.4
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 2.9e-18 96.3 57 91.2
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 3.2e-17 92.8 56 91.1
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 1.3e-15 87.4 142 38.0
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 5.1e-15 85.5 48 89.6
A06p30420 Brassica napus HOM05D003093 ORTHO05D015210 5.6e-14 82.0 51 84.3
A03p18450 Brassica napus HOM05D003093 ORTHO05D015210 2.8e-13 79.7 45 91.1
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 2.8e-13 79.7 45 91.1
A02p10760 Brassica napus HOM05D003093 ORTHO05D015210 4.8e-13 79.0 50 82.0
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 8.1e-13 78.2 155 32.9
BNapus_Darmor_BZH_scaffold_38p00130 Brassica napus HOM05D003093 ORTHO05D015210 4.5e-11 72.4 51 78.4
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 4.2e-09 65.9 142 32.4
A03p13900 Brassica napus HOM05D003093 ORTHO05D015210 2.1e-08 63.5 48 68.8
A06p30680 Brassica napus HOM05D003093 ORTHO05D015210 6.7e-07 58.5 40 75.0
Lj2P861T17 Lonicera japonica HOM05D003093 ORTHO05D019262 1.5e-06 57.4 97 38.1
C04p46620 Brassica napus HOM05D003093 ORTHO05D015210 1.9e-06 57.0 40 72.5
Lj2P860T6 Lonicera japonica HOM05D003093 ORTHO05D019262 1.9e-06 57.0 82 42.7
C03p14570 Brassica napus HOM05D003093 ORTHO05D015210 2.5e-06 56.6 61 54.1
BraA06t25990Z Brassica rapa HOM05D003093 ORTHO05D015210 2.5e-06 56.6 61 54.1
Lj2P868T23 Lonicera japonica HOM05D003093 ORTHO05D019262 4.3e-06 55.8 82 42.7


User provided reference genes

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