Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 7.4e-175 617.1 306 100.0
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 5.2e-120 434.9 332 66.9
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 2.6e-119 432.6 281 73.7
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 4.9e-118 428.3 332 65.7
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 3.2e-117 425.6 313 69.0
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 4.1e-117 425.2 312 69.2
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 7.0e-117 424.5 330 67.6
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 1.2e-116 423.7 326 69.0
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 2.0e-116 422.9 329 66.0
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 8.6e-115 417.5 332 64.2
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 7.3e-114 414.5 309 68.6
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 2.1e-113 412.9 320 65.9
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 2.8e-113 412.5 333 63.4
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 3.6e-113 412.1 330 63.9
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.2e-113 411.4 320 65.6
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 2.3e-112 409.5 317 64.0
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.3e-112 409.5 317 65.9
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.5e-111 406.8 324 65.7
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.5e-111 406.8 304 68.1
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.6e-111 406.0 320 65.0
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 3.4e-111 405.6 332 63.0
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 4.4e-111 405.2 317 65.3
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 4.4e-111 405.2 307 69.7
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 9.8e-111 404.1 320 64.4
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 9.8e-111 404.1 332 62.3
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 2.2e-110 402.9 332 62.7
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 3.7e-110 402.1 317 65.3
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 4.9e-110 401.7 325 63.1
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 8.3e-110 401.0 309 64.1
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 1.4e-109 400.2 331 62.8
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 2.4e-109 399.4 278 69.8
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.4e-109 399.4 313 65.8
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 4.1e-109 398.7 294 68.0
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 4.1e-109 398.7 330 63.3
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 4.1e-109 398.7 332 62.0
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 7.0e-109 397.9 326 62.0
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 9.2e-109 397.5 311 66.6
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 9.2e-109 397.5 319 65.5
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 1.6e-108 396.7 326 63.5
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.6e-108 396.7 306 63.7
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 2.1e-108 396.4 313 65.5
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.1e-108 396.4 320 63.4
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.7e-108 396.0 332 62.7
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.7e-108 396.0 332 63.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 4.6e-108 395.2 336 61.9
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.0e-107 394.0 333 63.1
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 1.0e-107 394.0 313 64.9
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.3e-107 392.9 310 64.8
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 3.0e-107 392.5 309 63.8
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.0e-107 392.5 309 63.8
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 3.0e-107 392.5 320 63.8
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 6.6e-107 391.3 312 66.0
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 6.6e-107 391.3 289 69.9
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 8.6e-107 391.0 334 62.6
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 1.5e-106 390.2 315 63.5
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 3.3e-106 389.0 330 62.4
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 3.3e-106 389.0 330 61.5
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.2e-105 387.1 330 62.4
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 2.8e-105 386.0 315 63.8
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 2.8e-105 386.0 315 63.5
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 3.6e-105 385.6 326 62.0
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 4.7e-105 385.2 432 50.2
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 1.1e-104 384.0 322 61.8
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 1.8e-104 383.3 264 69.3
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.8e-104 383.3 264 69.3
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 2.3e-104 382.9 299 64.5
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 2.3e-104 382.9 330 60.9
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 8.9e-104 380.9 264 68.9
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 3.4e-103 379.0 300 65.3
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 5.8e-103 378.3 303 63.7
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 1.7e-102 376.7 366 56.8
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.7e-102 376.7 251 71.7
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 3.7e-102 375.6 303 66.0
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 1.1e-101 374.0 305 63.6
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 2.4e-101 372.9 272 69.5
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 3.2e-101 372.5 337 59.3
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 4.1e-101 372.1 283 64.7
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 1.2e-100 370.5 283 64.7
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 1.6e-100 370.2 323 63.2
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 3.5e-100 369.0 325 59.7
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.7e-99 366.7 297 64.0
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 2.3e-99 366.3 266 69.5
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 3.0e-99 365.9 296 64.5
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 4.3e-98 362.1 356 57.0
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.6e-97 360.1 327 59.0
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.1e-96 357.5 278 62.9
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 1.4e-96 357.1 278 62.6
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.8e-96 356.7 323 58.5
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.7e-94 350.1 321 57.0
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.7e-94 350.1 321 57.0
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 2.9e-94 349.4 213 77.5
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.8e-94 349.0 320 59.4
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 1.3e-91 340.5 277 62.5
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 2.3e-91 339.7 366 52.5
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.9e-90 336.7 253 66.4
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 9.6e-90 334.3 309 58.3
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 2.9e-86 322.8 257 62.3
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.7e-83 313.5 255 63.9
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 2.6e-79 299.7 243 61.3
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 7.6e-79 298.1 323 50.5
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.3e-78 297.4 186 75.3
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 1.1e-74 284.3 301 55.1
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 2.1e-73 280.0 228 65.8
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 5.5e-69 265.4 210 61.4
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.0e-67 261.2 207 62.3
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 4.8e-65 252.3 141 83.0
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 2.2e-57 226.9 173 69.9
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.5e-42 177.6 143 65.7
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.1e-40 171.4 130 66.2
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 2.4e-40 170.2 384 34.6
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.3e-30 137.9 79 78.5
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 5.2e-27 125.9 151 46.4
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 7.7e-23 112.1 117 52.1
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 5.5e-21 105.9 207 33.3
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 3.7e-17 93.2 206 32.0
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 3.7e-17 93.2 192 30.2
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.4e-16 91.3 201 29.4
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.8e-16 90.9 199 31.2
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.8e-16 90.9 195 29.2
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 5.4e-16 89.4 200 29.0
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 9.1e-16 88.6 198 29.8
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 1.6e-15 87.8 197 32.5
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 1.6e-15 87.8 197 32.5
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 2.7e-15 87.0 203 30.5
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 2.7e-15 87.0 197 32.5
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.3e-14 84.7 218 30.3
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.7e-14 84.3 206 29.1
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.7e-14 84.3 200 31.0
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 2.3e-14 84.0 199 29.1
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 2.9e-14 83.6 199 28.6
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 2.9e-14 83.6 226 30.5
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 2.9e-14 83.6 227 29.1
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 2.9e-14 83.6 220 30.0
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 5.0e-14 82.8 216 29.6
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 5.0e-14 82.8 172 32.0
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 5.0e-14 82.8 175 31.4
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 5.0e-14 82.8 200 28.5
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 6.6e-14 82.4 230 28.3
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 6.6e-14 82.4 230 28.3
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 6.6e-14 82.4 199 27.6
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 6.6e-14 82.4 172 32.0
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 6.6e-14 82.4 195 28.7
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 8.6e-14 82.0 176 30.1
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 8.6e-14 82.0 196 29.1
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 1.1e-13 81.6 208 27.9
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.1e-13 81.6 226 27.4
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 1.1e-13 81.6 230 27.8
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 1.5e-13 81.3 196 28.1
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 1.5e-13 81.3 226 27.0
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 1.9e-13 80.9 215 28.4
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 1.9e-13 80.9 220 30.0
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 2.5e-13 80.5 176 30.1
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 2.5e-13 80.5 204 28.4
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 2.5e-13 80.5 176 30.7
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.3e-13 80.1 176 30.1
PSO761G0290 Papaver somniferum HOM05D006708 ORTHO05D008321 3.3e-13 80.1 199 29.1
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 3.3e-13 80.1 196 28.1
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 4.2e-13 79.7 188 30.3
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 4.2e-13 79.7 214 28.0
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 4.2e-13 79.7 196 28.6
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 5.5e-13 79.3 172 30.2
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 5.5e-13 79.3 196 27.0
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 5.5e-13 79.3 199 29.1
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 5.5e-13 79.3 196 28.6
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 7.2e-13 79.0 205 25.9
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 9.5e-13 78.6 199 28.6
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 2.8e-12 77.0 195 28.2
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 2.8e-12 77.0 214 27.6
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 4.7e-12 76.3 172 30.2
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 6.1e-12 75.9 172 29.1
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 6.1e-12 75.9 177 29.9
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.0e-11 75.1 200 31.5
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.8e-11 74.3 213 29.6
PGR031G3511 Punica granatum HOM05D006708 ORTHO05D008321 2.3e-11 73.9 200 27.5
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 2.3e-11 73.9 196 28.6
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 2.0e-10 70.9 181 30.4
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 2.9e-09 67.0 226 24.3
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 2.9e-09 67.0 180 28.9
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 2.7e-07 60.5 155 29.0
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 2.7e-07 60.5 162 27.8
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.7e-07 60.5 74 37.8
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 2.3e-06 57.4 137 27.7
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 3.9e-06 56.6 96 29.2
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 8.6e-06 55.5 201 27.4


User provided reference genes

Program Settings