Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 1.4e-129 466.5 258 100.0
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 3.4e-80 302.4 252 69.8
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 2.4e-78 296.2 252 70.6
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 3.2e-78 295.8 252 69.4
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 6.0e-77 291.6 251 68.5
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.0e-76 290.8 256 67.6
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 1.7e-76 290.0 251 68.1
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 1.9e-75 286.6 251 67.7
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 9.6e-75 284.3 252 65.5
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.3e-74 283.9 252 65.5
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.3e-74 283.9 252 65.5
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 2.1e-74 283.1 252 66.3
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.8e-74 282.7 252 65.1
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 3.6e-74 282.3 252 66.7
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 3.1e-73 279.3 254 66.1
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 5.3e-73 278.5 255 67.5
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 3.4e-72 275.8 261 63.6
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 7.6e-72 274.6 261 62.8
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 9.9e-72 274.2 256 64.8
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 2.9e-71 272.7 257 60.7
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 2.9e-71 272.7 255 61.2
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 2.9e-71 272.7 252 65.9
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 6.4e-71 271.6 255 66.3
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 8.4e-71 271.2 255 66.3
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.1e-70 270.8 259 62.2
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.9e-70 270.0 255 66.3
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 3.5e-69 265.8 258 62.8
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 3.5e-69 265.8 251 65.7
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 1.0e-68 264.2 252 64.3
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 5.1e-68 261.9 293 59.4
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 6.6e-68 261.5 252 65.1
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.9e-67 260.0 255 63.5
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 3.3e-67 259.2 260 60.8
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 7.3e-67 258.1 260 62.7
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 1.3e-66 257.3 258 62.4
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 4.8e-66 255.4 254 60.2
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.8e-65 253.4 260 58.8
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 1.8e-65 253.4 260 59.2
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 2.4e-65 253.1 252 62.7
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 2.4e-65 253.1 252 62.7
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 3.1e-65 252.7 260 58.8
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 3.1e-65 252.7 260 58.1
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 4.0e-65 252.3 260 58.8
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 4.0e-65 252.3 292 53.4
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 9.0e-65 251.1 255 62.0
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 9.0e-65 251.1 252 61.9
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 9.0e-65 251.1 258 60.9
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 1.2e-64 250.8 260 58.5
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 4.5e-64 248.8 261 60.9
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 1.3e-63 247.3 252 61.9
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 1.7e-63 246.9 255 62.4
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 2.2e-63 246.5 260 58.5
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 2.9e-63 246.1 255 63.9
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 3.8e-63 245.7 251 60.2
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 3.8e-63 245.7 288 51.0
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 6.4e-63 245.0 256 62.1
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 1.1e-62 244.2 263 58.2
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 3.2e-62 242.7 252 61.5
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.2e-61 240.7 254 59.4
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 4.6e-61 238.8 254 59.1
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 7.9e-61 238.0 261 58.2
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 1.0e-60 237.7 254 61.4
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 3.0e-60 236.1 251 59.0
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 6.7e-60 235.0 248 58.9
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 6.7e-60 235.0 260 56.5
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.1e-59 234.2 252 58.3
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 1.5e-59 233.8 254 57.5
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.1e-58 229.9 251 59.4
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 2.8e-58 229.6 254 57.9
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 2.8e-58 229.6 255 57.6
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 2.4e-57 226.5 254 58.3
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 6.9e-57 224.9 248 56.9
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.5e-56 223.8 261 57.9
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 3.8e-55 219.2 255 55.7
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 6.5e-55 218.4 252 54.0
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 1.4e-54 217.2 252 57.1
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 1.9e-54 216.9 272 53.3
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 3.2e-54 216.1 263 55.5
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.1e-53 213.4 291 50.9
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 2.7e-53 213.0 254 56.7
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 6.0e-53 211.8 252 54.8
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 6.0e-53 211.8 253 54.9
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 1.3e-52 210.7 253 54.9
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 5.7e-51 205.3 263 54.0
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 2.8e-50 203.0 254 53.9
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.1e-49 201.1 255 52.5
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 3.1e-49 199.5 256 48.0
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 1.2e-48 197.6 253 54.5
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 2.6e-48 196.4 205 62.9
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 1.3e-47 194.1 266 51.5
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 4.2e-46 189.1 251 49.4
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 5.5e-46 188.7 253 51.4
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 3.1e-41 172.9 253 50.2
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 3.6e-37 159.5 299 41.8
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 9.7e-35 151.4 244 45.1
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 3.1e-33 146.4 209 52.6
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 3.1e-33 146.4 111 66.7
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 5.9e-32 142.1 214 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 2.2e-31 140.2 287 41.1
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 1.1e-30 137.9 101 67.3
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.1e-29 133.7 149 58.4
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 7.4e-27 125.2 187 45.5
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 1.3e-26 124.4 291 38.1
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 1.4e-25 120.9 281 35.2
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.1e-25 119.8 187 44.9
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 4.1e-25 119.4 335 34.3
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 5.9e-24 115.5 70 78.6
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 1.5e-22 110.9 70 72.9
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 2.5e-22 110.2 152 55.3
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 1.4e-20 104.4 158 50.6
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.8e-17 94.0 203 42.4
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 3.1e-17 93.2 251 35.1
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.5e-14 82.4 180 38.3
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.1e-13 80.5 149 41.6
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.1e-13 80.5 149 41.6
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.6e-11 73.6 187 35.3
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 3.5e-08 63.2 119 45.4
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 3.8e-07 59.7 59 59.3


User provided reference genes

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