Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 7.2e-95 350.5 170 100.0
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.4e-42 174.9 287 40.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 8.1e-30 134.4 82 75.6
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.4e-29 133.7 82 76.8
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.8e-29 133.3 82 74.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.8e-29 133.3 82 74.4
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.8e-29 133.3 82 78.0
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.3e-29 132.9 82 74.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.3e-29 132.9 82 76.8
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 6.8e-29 131.3 82 75.6
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 8.9e-29 131.0 82 72.0
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.2e-28 130.6 82 74.4
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.5e-28 130.2 82 74.4
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.0e-28 129.8 94 68.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-28 129.8 89 68.5
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.0e-28 129.8 82 74.4
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.0e-28 129.8 82 74.4
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.0e-28 129.8 89 69.7
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 2.6e-28 129.4 82 73.2
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.6e-28 129.4 82 73.2
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.4e-28 129.0 82 74.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 3.4e-28 129.0 82 73.2
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 4.4e-28 128.6 82 74.4
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 4.4e-28 128.6 87 72.4
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.8e-28 128.3 81 74.1
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.8e-28 128.3 82 72.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 9.9e-28 127.5 82 73.2
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 9.9e-28 127.5 83 73.5
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.3e-27 127.1 91 67.0
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.3e-27 127.1 81 72.8
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.3e-27 127.1 82 73.2
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 1.3e-27 127.1 89 67.4
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.3e-27 127.1 82 72.0
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.3e-27 127.1 87 67.8
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.7e-27 126.7 81 72.8
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.7e-27 126.7 82 73.2
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 2.2e-27 126.3 82 70.7
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.2e-27 126.3 82 72.0
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.2e-27 126.3 82 70.7
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.2e-27 126.3 82 72.0
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.9e-27 125.9 82 73.2
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-27 125.9 82 68.3
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-27 125.9 82 68.3
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-27 125.9 82 68.3
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-27 125.9 82 68.3
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 2.9e-27 125.9 82 73.2
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 2.9e-27 125.9 81 71.6
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 3.8e-27 125.6 82 72.0
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 3.8e-27 125.6 92 66.3
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 3.8e-27 125.6 82 70.7
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.9e-27 125.2 82 70.7
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.9e-27 125.2 82 73.2
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 4.9e-27 125.2 87 67.8
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 4.9e-27 125.2 82 70.7
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.9e-27 125.2 89 67.4
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 6.4e-27 124.8 82 70.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 6.4e-27 124.8 82 72.0
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.4e-27 124.8 82 68.3
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 8.4e-27 124.4 82 70.7
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 8.4e-27 124.4 82 70.7
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 8.4e-27 124.4 81 72.8
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.1e-26 124.0 89 66.3
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.1e-26 124.0 82 69.5
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.4e-26 123.6 82 67.1
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.4e-26 123.6 82 69.5
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.9e-26 123.2 82 69.5
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.9e-26 123.2 82 69.5
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.9e-26 123.2 82 70.7
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.9e-26 123.2 82 69.5
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 3.2e-26 122.5 82 69.5
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 4.1e-26 122.1 82 68.3
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 5.4e-26 121.7 82 69.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 5.4e-26 121.7 82 68.3
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 5.4e-26 121.7 82 72.0
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 5.4e-26 121.7 82 69.5
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 5.4e-26 121.7 82 69.5
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.2e-26 120.9 79 70.9
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 9.2e-26 120.9 79 70.9
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.2e-26 120.9 79 70.9
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.2e-26 120.9 79 70.9
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 9.2e-26 120.9 82 69.5
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.2e-25 120.6 82 70.7
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.1e-25 119.8 82 68.3
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.1e-25 119.8 82 70.7
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-25 119.4 79 69.6
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.7e-25 119.4 97 64.9
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.7e-25 119.4 82 69.5
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 3.5e-25 119.0 96 62.5
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.5e-25 119.0 82 70.7
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.5e-25 119.0 82 70.7
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 6.0e-25 118.2 82 68.3
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.8e-25 117.9 82 65.9
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.8e-25 117.9 82 65.9
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 7.8e-25 117.9 82 67.1
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 7.8e-25 117.9 82 69.5
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 7.8e-25 117.9 82 64.6
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.0e-24 117.5 82 68.3
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.0e-24 117.5 82 68.3
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.0e-24 117.5 96 63.5
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-24 117.1 79 68.4
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.3e-24 117.1 82 65.9
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 5.1e-24 115.2 82 69.5
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 8.6e-24 114.4 79 65.8
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 8.6e-24 114.4 79 65.8
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 8.6e-24 114.4 81 66.7
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 8.6e-24 114.4 82 69.5
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 8.6e-24 114.4 87 63.2
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.1e-23 114.0 81 64.2
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.1e-23 114.0 82 67.1
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.1e-23 114.0 82 67.1
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.1e-23 114.0 82 68.3
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.1e-22 109.8 96 60.4
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 3.6e-22 109.0 80 63.8
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.4e-21 107.1 97 61.9
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.8e-21 106.7 69 72.5
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 9.9e-20 100.9 95 54.7
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 9.9e-20 100.9 85 55.3
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 4.9e-19 98.6 95 51.6
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 9.3e-18 94.4 92 54.3
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.0e-16 89.4 44 93.2
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.1e-16 88.6 44 93.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.5e-15 87.0 52 76.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 7.3e-15 84.7 92 51.1
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 2.8e-14 82.8 92 46.7
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 4.8e-14 82.0 53 71.7
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 2.4e-13 79.7 49 71.4
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 6.9e-13 78.2 181 28.2
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-12 76.6 48 70.8
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.0e-12 76.6 74 52.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 3.4e-12 75.9 55 63.6
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 8.4e-11 71.2 58 60.3
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 2.4e-10 69.7 53 60.4
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.0e-08 64.3 55 58.2
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.3e-07 58.9 55 54.5
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 9.6e-07 57.8 43 62.8
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 2.1e-06 56.6 40 65.0


User provided reference genes

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