Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 2598.5 1271 100.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1864.7 1280 71.1
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1855.9 1275 71.5
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1851.3 1277 71.5
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1848.9 1280 69.9
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1845.1 1280 69.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1843.9 1280 70.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1833.9 1277 70.3
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1829.7 1273 70.9
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1827.4 1273 70.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1823.9 1277 70.1
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1820.1 1274 70.5
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1817.7 1277 70.1
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1817.4 1273 70.6
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1816.2 1275 69.4
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1812.7 1276 69.4
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1807.0 1276 69.7
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1801.6 1274 69.5
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1801.2 1272 68.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1800.0 1283 68.7
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1798.5 1272 70.0
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1789.6 1272 67.9
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1788.5 1276 68.8
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1788.1 1277 68.8
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1784.2 1271 67.1
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1783.8 1274 67.3
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1783.1 1280 69.0
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1782.3 1275 68.7
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1773.8 1277 68.4
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1773.1 1277 68.5
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1771.1 1277 68.5
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1771.1 1278 68.4
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1760.7 1274 67.3
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1758.0 1302 67.0
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1754.6 1272 66.6
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1754.2 1239 70.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1745.3 1272 66.2
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1740.7 1277 67.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1739.2 1273 66.8
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1738.4 1272 66.4
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1738.0 1241 69.0
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1730.3 1272 66.4
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1729.9 1269 66.5
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1725.7 1281 66.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1724.9 1272 66.2
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1722.2 1286 66.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1721.8 1274 66.9
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1710.7 1274 65.9
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1709.1 1281 65.5
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1703.0 1275 66.2
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1702.2 1376 61.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1699.5 1280 65.2
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1272 66.1
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1690.2 1275 65.1
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1678.3 1268 65.1
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1669.1 1284 65.0
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1663.3 1274 63.5
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1662.1 1275 64.2
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1659.4 1351 60.5
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1656.0 1273 63.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1654.4 1273 64.2
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1651.3 1274 63.7
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1647.5 1285 63.6
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1643.6 1270 63.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1642.9 1279 63.5
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1632.1 1280 63.3
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1630.2 1279 63.3
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1630.2 1275 62.7
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1629.8 1278 63.4
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1624.0 1277 62.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1623.2 1284 63.1
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1622.4 1273 62.1
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1622.4 1274 63.4
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1620.5 1281 63.1
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1618.6 1273 62.1
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1618.2 1365 60.5
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1611.3 1287 62.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1604.7 1185 66.1
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1600.1 1225 64.4
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1596.6 1273 61.7
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1593.2 1273 61.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1588.2 1279 62.7
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1578.5 1289 61.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1572.0 1192 66.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1546.2 1264 61.2
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1531.2 1269 60.4
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1523.5 1043 70.8
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1490.7 1041 69.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1465.3 1033 69.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1452.6 1271 56.6
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1450.3 1049 67.9
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1424.5 1271 56.0
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1359.0 1290 53.0
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1348.2 1264 56.2
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1279.2 1162 56.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1260.0 1230 53.0
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1253.8 1271 53.2
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1195.3 939 64.3
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1182.5 831 68.7
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1164.4 876 63.9
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1159.1 828 68.7
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1143.3 810 71.1
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1141.3 832 66.1
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1110.1 940 61.3
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1102.0 1334 45.8
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1082.0 1200 48.2
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1078.5 762 68.8
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.7e-311 1073.2 777 66.5
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.4e-307 1060.1 1266 46.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.4e-306 1055.0 940 59.0
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 4.4e-306 1055.0 1324 45.5
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.1e-296 1023.8 1338 44.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 7.8e-295 1017.7 1150 48.4
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 2.7e-287 992.6 767 64.3
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.6e-282 976.1 690 69.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.3e-230 803.5 1504 35.6
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.9e-217 760.0 568 65.8
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 8.0e-215 751.9 624 59.8
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.7e-209 734.2 500 71.6
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 3.7e-204 716.5 612 55.6
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 6.2e-191 672.5 501 63.9
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 7.1e-171 605.9 466 66.5
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 9.7e-128 462.6 402 60.7
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 9.4e-123 446.0 325 69.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.5e-120 438.7 363 62.5
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.1e-110 406.0 334 61.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.0e-100 372.9 1390 26.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 6.3e-87 327.0 1286 24.6
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.6e-74 285.8 261 55.2
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.5e-43 183.0 129 70.5
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.4e-41 175.6 236 44.9
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.0e-40 172.6 152 56.6
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 6.0e-29 134.4 104 66.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 8.2e-26 124.0 78 73.1
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.3e-15 90.1 68 61.8
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 2.0e-11 76.3 50 70.0
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 3.3e-11 75.5 53 66.0
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 3.3e-11 75.5 146 33.6
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.3e-11 75.5 46 76.1
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 9.7e-11 73.9 53 64.2
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 6.3e-10 71.2 56 58.9
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.1e-09 70.5 95 37.9
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.8e-09 69.7 232 28.9
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 2.4e-09 69.3 40 82.5
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 5.3e-09 68.2 48 66.7
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 6.9e-09 67.8 167 31.7
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 9.1e-09 67.4 48 64.6
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 9.1e-09 67.4 166 29.5
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 1.5e-08 66.6 48 64.6
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 2.0e-08 66.2 48 64.6
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 2.0e-08 66.2 48 64.6
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.6e-08 65.9 80 47.5
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 3.4e-08 65.5 48 62.5
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 3.4e-08 65.5 48 62.5
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 3.4e-08 65.5 48 62.5
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 3.4e-08 65.5 48 62.5
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 3.4e-08 65.5 164 31.1
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.0e-07 63.9 151 28.5
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.3e-07 63.5 195 31.3
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 5.0e-07 61.6 164 29.9
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 8.5e-07 60.8 63 54.0
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 1.1e-06 60.5 150 31.3
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.9e-06 59.7 96 37.5


User provided reference genes

Program Settings