Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 4.7e-93 344.7 204 100.0
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 3.5e-80 302.0 204 89.2
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 7.8e-80 300.8 204 86.8
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 5.1e-79 298.1 204 89.2
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 6.6e-79 297.7 204 89.2
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 6.6e-79 297.7 204 89.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 6.6e-79 297.7 201 91.0
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.5e-78 296.6 204 86.8
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.9e-78 296.2 204 87.7
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.1e-77 292.7 205 85.9
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.6e-77 292.0 205 85.9
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 8.1e-77 290.8 205 86.3
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.4e-76 289.3 206 87.9
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.4e-76 289.3 204 84.8
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.4e-76 289.3 201 88.1
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 8.9e-76 287.3 196 88.3
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 2.0e-75 286.2 199 85.4
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 4.4e-75 285.0 205 85.9
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 85.3
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 9.9e-75 283.9 204 85.3
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.2e-74 282.7 202 83.2
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.9e-74 282.3 200 85.0
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.9e-74 282.3 200 85.0
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 4.9e-74 281.6 200 85.0
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 8.4e-74 280.8 201 84.1
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 8.4e-74 280.8 204 83.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 8.4e-74 280.8 204 84.8
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.1e-73 280.4 200 84.5
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.1e-73 280.4 200 86.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.9e-73 279.6 197 87.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.2e-73 278.9 204 83.3
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 5.4e-73 278.1 204 83.8
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 5.4e-73 278.1 204 82.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 7.1e-73 277.7 204 81.9
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 9.3e-73 277.3 201 80.6
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.2e-72 276.9 201 85.6
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.6e-72 276.6 203 82.8
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.1e-72 276.2 205 84.4
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 2.1e-72 276.2 201 83.6
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 2.7e-72 275.8 204 81.4
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 2.7e-72 275.8 204 82.4
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.7e-72 275.8 202 86.1
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 6.0e-72 274.6 204 81.9
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.0e-71 273.9 200 84.5
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.0e-71 273.9 199 84.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.3e-71 273.5 204 82.8
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.3e-71 273.5 204 81.4
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 83.3
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 3.0e-71 272.3 204 81.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 3.0e-71 272.3 204 81.9
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 5.1e-71 271.6 204 80.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 6.6e-71 271.2 203 80.8
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 6.6e-71 271.2 205 82.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.6e-71 271.2 206 83.0
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 8.7e-71 270.8 200 81.0
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.7e-71 270.8 206 83.0
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 8.7e-71 270.8 200 82.5
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.5e-70 270.0 196 85.2
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.9e-70 269.6 206 82.5
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.9e-70 269.6 247 70.9
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 2.5e-70 269.2 198 79.8
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 3.3e-70 268.9 200 79.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 4.3e-70 268.5 205 78.5
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.3e-70 268.5 201 84.1
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 5.6e-70 268.1 201 83.6
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 5.6e-70 268.1 203 81.3
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 9.6e-70 267.3 205 82.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.3e-69 266.9 206 81.6
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.6e-69 266.5 201 80.6
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.1e-69 266.2 201 82.6
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 3.6e-69 265.4 203 81.3
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.4e-68 263.5 201 84.6
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 2.4e-68 262.7 203 78.3
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 4.0e-68 261.9 200 80.0
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.3e-68 261.5 201 84.1
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 5.3e-68 261.5 205 74.1
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 5.3e-68 261.5 205 80.0
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 5.3e-68 261.5 200 79.5
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 9.0e-68 260.8 200 78.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.0e-67 259.6 195 85.1
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 2.6e-67 259.2 204 78.4
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.6e-67 259.2 200 82.0
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 78.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 5.8e-67 258.1 204 77.0
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 81.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 81.5
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 7.6e-67 257.7 200 78.0
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 7.6e-67 257.7 200 82.0
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 7.6e-67 257.7 199 80.4
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.3e-66 256.9 200 79.5
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.7e-66 256.5 200 78.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.9e-65 253.1 200 76.5
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.9e-65 253.1 153 84.3
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.6e-64 250.0 198 76.3
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 6.0e-64 248.1 170 88.8
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.0e-64 248.1 207 76.8
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.0e-63 247.3 156 84.0
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.9e-63 245.4 204 75.0
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 3.9e-63 245.4 195 81.0
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.6e-62 241.5 202 75.2
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 6.2e-61 238.0 205 71.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.1e-60 237.3 199 74.4
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.1e-60 237.3 195 79.5
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 5.3e-60 235.0 219 62.6
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 6.9e-60 234.6 276 58.7
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-59 233.4 161 89.4
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.1e-57 224.6 149 75.2
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.5e-56 222.2 198 73.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.5e-54 216.1 145 73.8
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.3e-54 215.7 297 55.6
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.8e-53 212.6 141 76.6
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.8e-53 211.8 196 73.5
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 4.8e-53 211.8 214 59.3
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 8.1e-53 211.1 204 68.1
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.1e-52 210.7 204 64.7
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.9e-50 201.8 204 66.7
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 3.5e-48 195.7 110 88.2
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.8e-45 186.0 162 77.2
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.4e-44 183.0 146 72.6
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 4.1e-44 182.2 224 63.4
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 6.1e-40 168.3 144 65.3
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-38 163.3 124 73.4
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.8e-37 158.7 210 62.4
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.8e-36 156.8 223 46.6
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.4e-36 156.4 123 82.1
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 3.4e-35 152.5 238 51.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.6e-32 143.7 285 48.1
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.6e-32 143.7 203 46.3
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.2e-24 117.5 214 45.8
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.0e-22 110.2 155 47.1
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 4.2e-17 92.4 96 74.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 9.4e-17 91.3 214 38.8
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.6e-16 90.5 91 75.8
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 5.3e-12 75.5 46 84.8
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.7e-10 70.5 163 29.4


User provided reference genes

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