Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00930 Eucalyptus grandis HOM05D003148 ORTHO05D003894 3.4e-123 444.9 209 100.0
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.1e-97 360.1 250 71.6
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 2.6e-78 295.8 262 56.9
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 4.4e-78 295.0 253 58.1
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 9.2e-76 287.3 253 56.5
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 1.2e-75 287.0 252 58.3
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.2e-75 287.0 250 57.6
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.6e-75 286.6 253 57.7
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 1.6e-75 286.6 253 56.9
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 2.0e-75 286.2 252 57.9
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 3.5e-75 285.4 253 55.3
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 4.5e-75 285.0 252 57.5
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 5.9e-75 284.6 252 57.9
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 1.7e-74 283.1 253 56.9
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 2.3e-74 282.7 250 57.2
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 2.9e-74 282.3 247 57.9
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 2.9e-74 282.3 253 56.9
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 3.9e-74 282.0 247 57.9
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 6.6e-74 281.2 253 55.7
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 6.6e-74 281.2 245 58.0
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 6.6e-74 281.2 245 58.0
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 8.6e-74 280.8 252 56.3
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 8.6e-74 280.8 259 55.6
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 8.6e-74 280.8 259 55.6
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 8.6e-74 280.8 250 56.4
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.1e-73 280.4 253 56.1
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.5e-73 280.0 253 55.7
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.5e-73 280.0 253 55.7
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.9e-73 279.6 253 55.3
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.9e-73 279.6 259 55.2
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 2.5e-73 279.3 253 56.1
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 3.3e-73 278.9 259 55.6
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 3.3e-73 278.9 259 55.6
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 4.3e-73 278.5 253 54.9
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 4.3e-73 278.5 253 55.3
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 4.3e-73 278.5 253 55.3
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 4.3e-73 278.5 250 56.4
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 5.6e-73 278.1 253 56.1
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 5.6e-73 278.1 259 54.4
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 7.3e-73 277.7 253 55.3
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 7.3e-73 277.7 259 55.6
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 7.3e-73 277.7 252 55.2
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 9.5e-73 277.3 251 56.6
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 9.5e-73 277.3 253 55.3
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 9.5e-73 277.3 253 57.3
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 9.5e-73 277.3 278 51.8
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.2e-72 276.9 247 57.1
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 1.6e-72 276.6 259 55.6
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 1.6e-72 276.6 253 54.5
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.6e-72 276.6 253 56.5
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 2.8e-72 275.8 247 55.9
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 2.8e-72 275.8 253 54.9
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 3.6e-72 275.4 251 56.6
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 8.0e-72 274.2 250 54.8
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 8.0e-72 274.2 251 56.2
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 1.0e-71 273.9 253 55.3
CSS0002581 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.4e-71 273.5 247 57.1
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.4e-71 273.5 253 56.1
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 2.3e-71 272.7 253 55.3
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 3.1e-71 272.3 253 55.3
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 3.1e-71 272.3 251 54.6
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 4.0e-71 271.9 253 56.1
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 4.0e-71 271.9 246 56.9
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 4.0e-71 271.9 253 54.9
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 5.2e-71 271.6 253 53.8
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 6.8e-71 271.2 251 55.8
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 6.8e-71 271.2 253 55.7
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 6.8e-71 271.2 263 54.4
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 8.9e-71 270.8 253 53.8
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 8.9e-71 270.8 253 54.5
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 1.2e-70 270.4 253 55.3
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 1.2e-70 270.4 251 55.4
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 1.2e-70 270.4 253 54.5
Os08g0175600 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.5e-70 270.0 253 53.0
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 2.0e-70 269.6 253 55.7
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 2.0e-70 269.6 253 55.7
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 2.0e-70 269.6 252 55.2
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 2.6e-70 269.2 253 54.9
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 2.6e-70 269.2 253 54.9
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 2.6e-70 269.2 251 55.0
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 3.4e-70 268.9 253 53.8
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 3.4e-70 268.9 253 53.8
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 5.8e-70 268.1 253 54.9
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 7.5e-70 267.7 253 54.5
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 7.5e-70 267.7 253 53.4
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 9.8e-70 267.3 253 53.4
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 1.3e-69 266.9 251 54.6
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 1.7e-69 266.5 253 54.2
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 2.2e-69 266.2 253 54.2
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 2.2e-69 266.2 253 53.8
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.9e-69 265.8 253 54.2
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 8.3e-69 264.2 269 52.8
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 8.3e-69 264.2 253 54.2
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 1.1e-68 263.8 253 52.6
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 1.1e-68 263.8 254 53.1
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.4e-68 263.5 253 53.8
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 1.4e-68 263.5 253 53.0
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 1.4e-68 263.5 254 53.5
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 1.4e-68 263.5 253 53.0
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.9e-68 263.1 253 53.4
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 2.4e-68 262.7 253 52.2
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 2.4e-68 262.7 253 53.0
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 3.2e-68 262.3 253 53.4
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 4.1e-68 261.9 254 53.5
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 4.1e-68 261.9 253 52.2
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 5.4e-68 261.5 255 53.3
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 9.2e-68 260.8 253 53.4
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 1.2e-67 260.4 253 53.4
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 1.2e-67 260.4 254 51.2
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 2.0e-67 259.6 252 53.6
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 2.7e-67 259.2 253 53.4
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 3.5e-67 258.8 253 52.6
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 3.5e-67 258.8 253 51.4
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 3.5e-67 258.8 253 53.4
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 3.5e-67 258.8 253 53.0
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 3.5e-67 258.8 283 49.1
TPR.G16585 Trifolium pratense HOM05D003148 ORTHO05D003894 4.6e-67 258.5 253 53.0
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 6.0e-67 258.1 229 56.3
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 6.0e-67 258.1 253 53.4
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.0e-66 257.3 253 51.0
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 1.0e-66 257.3 253 51.4
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 1.0e-66 257.3 253 52.2
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 1.7e-66 256.5 253 51.4
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.7e-66 256.5 253 51.8
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 2.3e-66 256.1 253 51.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 5.0e-66 255.0 253 50.6
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 6.6e-66 254.6 253 51.4
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.1e-65 253.8 253 50.6
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 1.5e-65 253.4 253 51.0
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 1.5e-65 253.4 253 51.0
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 1.9e-65 253.1 251 53.0
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 3.3e-65 252.3 253 50.6
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 9.5e-65 250.8 309 45.3
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.2e-64 250.4 253 51.0
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 1.6e-64 250.0 261 50.2
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 1.6e-64 250.0 261 50.2
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 6.2e-64 248.1 267 50.2
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 1.7e-61 240.0 271 47.6
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 6.4e-61 238.0 206 59.7
PSO478G0587 Papaver somniferum HOM05D003148 ORTHO05D003894 8.3e-61 237.7 258 48.1
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 9.2e-60 234.2 258 48.4
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 1.6e-59 233.4 251 49.0
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 1.1e-55 220.7 253 45.5
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 1.1e-52 210.7 258 43.4
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.3e-50 203.8 260 43.8
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.3e-50 203.8 257 42.0
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 1.9e-49 199.9 249 42.6
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 2.5e-49 199.5 335 38.2
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.1e-47 194.1 257 41.2
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 1.8e-47 193.4 257 41.6
Duzib170G0320 Durio zibethinus HOM05D003148 ORTHO05D003894 2.0e-46 189.9 186 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 1.3e-45 187.2 287 38.7
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 2.7e-43 179.5 234 43.6
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 1.5e-38 163.7 179 48.0
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 1.5e-38 163.7 289 36.3
HPP92_009351 Vanilla planifolia HOM05D003148 ORTHO05D003894 2.0e-38 163.3 98 73.5
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 4.4e-38 162.2 179 49.7
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 3.7e-24 115.9 288 28.8
Lsat_1_v5_gn_6_61201 Lactuca sativa HOM05D003148 ORTHO05D026836 1.4e-23 114.0 102 54.9
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.3e-21 107.5 84 59.5
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.7e-19 99.8 194 33.0
TAR624G0017 Trochodendron aralioides HOM05D003148 ORTHO05D026836 7.9e-19 98.2 90 55.6
Lj6A83T13 Lonicera japonica HOM05D003148 ORTHO05D003894 8.7e-18 94.7 153 38.6
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 3.3e-17 92.8 251 29.9
CiPaw.11G187500 Carya illinoinensis HOM05D003148 ORTHO05D003894 1.5e-14 84.0 55 69.1
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 2.0e-14 83.6 54 72.2
Ciclev10008272m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.7e-13 80.5 51 70.6
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 8.4e-13 78.2 68 50.0
Lju760A7G20 Lonicera japonica HOM05D003148 ORTHO05D003894 3.1e-07 59.7 42 61.9


User provided reference genes

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