Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 0.0e+00 1317.8 692 100.0
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.1e-100 370.9 695 39.6
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 2.1e-92 344.4 796 34.8
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 3.2e-85 320.5 807 33.6
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 5.5e-85 319.7 689 36.6
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.2e-84 318.5 664 37.0
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.1e-84 317.8 680 35.9
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 3.0e-83 313.9 768 35.8
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 4.0e-83 313.5 680 35.9
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 4.4e-82 310.1 689 36.1
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 2.2e-81 307.8 687 36.1
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.0e-79 301.2 679 34.0
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.7e-78 298.1 715 35.2
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 2.9e-78 297.4 702 36.5
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 7.2e-77 292.7 698 35.8
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.7e-76 290.8 414 44.9
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 6.1e-76 289.7 730 34.7
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 1.2e-74 285.4 817 32.9
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.5e-74 285.0 677 33.8
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 7.5e-74 282.7 691 33.9
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 9.8e-74 282.3 770 31.4
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 2.2e-73 281.2 729 32.2
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 6.3e-73 279.6 714 33.8
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 8.3e-73 279.3 711 33.5
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 8.3e-73 279.3 770 31.2
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.4e-72 278.5 696 33.8
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.8e-72 278.1 734 33.2
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.1e-72 277.3 772 32.4
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 4.1e-72 276.9 619 37.0
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 5.4e-72 276.6 732 33.7
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 7.0e-72 276.2 708 34.0
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 9.1e-72 275.8 807 31.8
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 2.7e-71 274.2 733 31.9
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 7.7e-71 272.7 734 32.6
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.3e-70 271.2 694 34.6
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 3.8e-70 270.4 705 34.3
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 3.8e-70 270.4 733 31.4
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 9.5e-69 265.8 692 33.5
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.2e-68 265.4 768 30.7
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 1.4e-67 261.9 702 33.6
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 2.3e-67 261.2 737 33.6
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 3.0e-67 260.8 777 32.8
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 3.0e-67 260.8 692 33.4
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 8.8e-67 259.2 770 32.6
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.2e-66 258.8 686 33.8
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 1.2e-66 258.8 730 33.6
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.5e-66 258.5 684 33.6
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 3.4e-66 257.3 552 37.1
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 4.4e-66 256.9 714 32.5
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 7.5e-66 256.1 729 31.8
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 2.2e-65 254.6 744 31.5
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 2.2e-65 254.6 710 31.8
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 3.7e-65 253.8 703 32.1
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 6.3e-65 253.1 785 32.0
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 4.1e-64 250.4 688 32.6
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 4.1e-64 250.4 699 32.2
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.4e-64 250.0 702 31.2
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 1.2e-63 248.8 685 31.4
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.2e-63 248.8 728 32.3
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 2.7e-63 247.7 716 31.1
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 2.7e-63 247.7 719 31.7
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 4.5e-63 246.9 698 32.8
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 6.6e-62 243.0 422 39.6
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.5e-61 241.9 573 33.7
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 3.3e-61 240.7 226 56.6
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 7.3e-61 239.6 390 40.5
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 9.5e-61 239.2 390 41.5
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 2.8e-60 237.7 709 30.3
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 1.0e-59 235.7 448 35.3
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.5e-58 231.9 687 31.6
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 7.5e-58 229.6 263 48.3
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 9.8e-58 229.2 694 30.5
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 1.7e-57 228.4 809 30.5
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 4.9e-57 226.9 708 29.8
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 6.4e-57 226.5 816 29.4
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.4e-56 225.3 508 33.3
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.8e-56 224.9 774 29.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 2.4e-56 224.6 699 31.5
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 4.1e-56 223.8 537 35.0
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 7.0e-56 223.0 718 30.8
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 7.8e-55 219.5 783 28.9
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 7.8e-55 219.5 690 29.7
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.7e-54 218.4 775 30.1
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 5.0e-54 216.9 763 30.3
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 3.3e-53 214.2 724 29.6
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 5.6e-53 213.4 851 29.5
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 9.5e-53 212.6 785 30.1
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.8e-52 211.1 421 33.7
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 6.8e-51 206.5 665 28.7
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.4e-48 198.0 775 28.3
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 2.4e-48 198.0 784 26.9
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 4.1e-48 197.2 547 31.1
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 8.6e-46 189.5 691 29.1
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.9e-45 188.3 691 29.2
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.4e-43 182.2 217 47.0
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 8.9e-43 179.5 698 26.1
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.3e-41 175.6 355 37.7
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 3.7e-41 174.1 166 54.2
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 6.4e-41 173.3 634 29.7
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 1.4e-40 172.2 364 36.0
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 5.6e-37 160.2 200 44.5
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 3.0e-30 137.9 313 37.1
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 5.6e-29 133.7 142 51.4
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 5.6e-29 133.7 199 42.2
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.8e-27 128.6 94 62.8
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 2.0e-26 125.2 96 58.3
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 4.2e-24 117.5 703 25.2
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.4e-19 102.4 269 31.2
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.2e-18 99.4 103 49.5
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 2.3e-14 85.1 77 54.5
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 4.3e-13 80.9 296 29.1
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 1.6e-12 79.0 244 30.3
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 1.6e-12 79.0 501 26.3
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 6.2e-12 77.0 501 26.3
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 3.4e-10 71.2 554 24.4
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 2.2e-09 68.6 57 52.6
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 1.9e-08 65.5 73 50.7
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.9e-08 65.5 76 47.4
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 9.3e-08 63.2 73 49.3
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 9.3e-08 63.2 73 49.3
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.8e-06 58.9 71 42.3
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 5.1e-06 57.4 192 27.6


User provided reference genes

Program Settings