Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00114 Eucalyptus grandis HOM05D002228 ORTHO05D002347 2.3e-120 435.6 226 100.0
CiPaw.07G197000 Carya illinoinensis HOM05D002228 ORTHO05D002347 6.1e-41 171.8 232 44.4
FAN22G1886 Fragaria x ananassa HOM05D002228 ORTHO05D002347 1.5e-39 167.2 238 45.0
FAN17G2190 Fragaria x ananassa HOM05D002228 ORTHO05D002347 9.7e-39 164.5 238 45.0
FvH4_4g07290 Fragaria vesca HOM05D002228 ORTHO05D002347 1.3e-38 164.1 239 45.2
FAN12G0633 Fragaria x ananassa HOM05D002228 ORTHO05D002347 1.7e-38 163.7 239 43.9
CiPaw.08G032600 Carya illinoinensis HOM05D002228 ORTHO05D002347 2.2e-38 163.3 234 41.5
RcHm_v2.0_Chr4g0399601 Rosa chinensis HOM05D002228 ORTHO05D002347 3.7e-38 162.5 239 43.9
Cfa013452 Carpinus fangiana HOM05D002228 ORTHO05D002347 4.8e-38 162.2 234 42.3
Haze_22018 Corylus avellana HOM05D002228 ORTHO05D002347 8.2e-38 161.4 234 42.7
Thecc.09G186000 Theobroma cacao HOM05D002228 ORTHO05D002347 1.8e-37 160.2 238 43.7
FAN07G2529 Fragaria x ananassa HOM05D002228 ORTHO05D002347 2.4e-37 159.8 238 44.1
Ciclev10007587m.g Citrus clementina HOM05D002228 ORTHO05D002347 4.1e-37 159.1 234 42.7
CANSAT11G2326 Cannabis sativa HOM05D002228 ORTHO05D002347 1.5e-36 157.1 236 44.9
Prupe.1G075500 Prunus persica HOM05D002228 ORTHO05D002347 3.4e-36 156.0 238 42.4
PGR142G2981 Punica granatum HOM05D002228 ORTHO05D002347 5.9e-36 155.2 236 44.9
Atru.chr7.756 Acer truncatum HOM05D002228 ORTHO05D002347 7.7e-36 154.8 238 42.9
Atru.chr7.777 Acer truncatum HOM05D002228 ORTHO05D002347 7.7e-36 154.8 238 42.9
QL04p081495 Quercus lobata HOM05D002228 ORTHO05D002347 2.9e-35 152.9 233 42.1
Potri.018G142400 Populus trichocarpa HOM05D002228 ORTHO05D002347 3.8e-35 152.5 234 41.0
Sabra18G0116300 Salix brachista HOM05D002228 ORTHO05D002347 5.0e-35 152.1 234 40.6
GSVIVG01010860001 Vitis vinifera HOM05D002228 ORTHO05D002347 1.9e-34 150.2 237 43.9
Potri.006G075500 Populus trichocarpa HOM05D002228 ORTHO05D002347 2.5e-34 149.8 229 40.6
Manes.14G158300 Manihot esculenta HOM05D002228 ORTHO05D002347 5.5e-34 148.7 236 41.1
COL.COLO4_07060 Corchorus olitorius HOM05D002228 ORTHO05D002347 1.2e-33 147.5 232 38.8
Actinidia01276 Actinidia chinensis HOM05D002228 ORTHO05D002347 2.7e-33 146.4 227 41.0
CsaV3_1G031870 Cucumis sativus L. HOM05D002228 ORTHO05D002347 6.1e-33 145.2 225 43.1
MD16G1248700 Malus domestica HOM05D002228 ORTHO05D002347 1.0e-32 144.4 240 38.8
Hma1.2p1_1326F.1_g275820 Hydrangea macrophylla HOM05D002228 ORTHO05D002347 2.3e-32 143.3 231 40.7
CSS0032468 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.0e-32 142.9 229 41.0
vmacro20815 Vaccinium macrocarpon HOM05D002228 ORTHO05D002347 1.1e-31 141.0 234 40.6
Sed0011029 Sechium edule HOM05D002228 ORTHO05D002347 2.0e-31 140.2 223 41.3
MD13G1241800 Malus domestica HOM05D002228 ORTHO05D002347 2.6e-31 139.8 246 39.0
Rhsim01G0117100 Rhododendron simsii HOM05D002228 ORTHO05D002347 5.7e-31 138.7 233 40.8
Glyma.17G059400 Glycine max HOM05D002228 ORTHO05D002347 2.2e-30 136.7 231 40.3
Gohir.A05G002300 Gossypium hirsutum HOM05D002228 ORTHO05D002347 2.2e-30 136.7 243 39.5
ClCG06G013600 Citrullus lanatus HOM05D002228 ORTHO05D002347 3.7e-30 136.0 254 38.2
Lalb_Chr13g0300011 Lupinus albus HOM05D002228 ORTHO05D002347 4.8e-30 135.6 229 39.7
Phvul.003G141400 Phaseolus vulgaris HOM05D002228 ORTHO05D002347 1.8e-29 133.7 230 40.9
Gohir.D05G002900 Gossypium hirsutum HOM05D002228 ORTHO05D002347 4.1e-29 132.5 240 37.1
Gorai.009G002500 Gossypium raimondii HOM05D002228 ORTHO05D002347 4.1e-29 132.5 240 38.3
VMungo1215G0644 Vigna mungo HOM05D002228 ORTHO05D002347 7.0e-29 131.7 231 39.8
VMungo1309G0834 Vigna mungo HOM05D002228 ORTHO05D002347 1.2e-28 131.0 237 38.8
TWI34G1415 Tripterygium wilfordii HOM05D002228 ORTHO05D002347 1.6e-28 130.6 223 40.4
Nitab4.5_0000617g0060 Nicotiana tabacum HOM05D002228 ORTHO05D002347 7.7e-28 128.3 232 38.4
MELO3C017429.2 Cucumis melo HOM05D002228 ORTHO05D002347 1.3e-27 127.5 212 40.6
Lj4g0002272 Lotus japonicus HOM05D002228 ORTHO05D002347 2.9e-27 126.3 233 40.8
Ca_02107_v3 Cicer arietinum L. HOM05D002228 ORTHO05D002347 3.8e-27 125.9 231 38.1
Nitab4.5_0010000g0010 Nicotiana tabacum HOM05D002228 ORTHO05D002347 3.8e-27 125.9 231 37.7
CAN.G491.9 Capsicum annuum HOM05D002228 ORTHO05D002347 6.5e-27 125.2 232 36.6
Lj6g0002831 Lotus japonicus HOM05D002228 ORTHO05D002347 8.5e-27 124.8 234 37.6
Nn8g40782 Nelumbo nucifera HOM05D002228 ORTHO05D002347 1.1e-26 124.4 247 36.0
arahy.Tifrunner.gnm1.ann1.FTH9FU Arachis hypogaea HOM05D002228 ORTHO05D002347 1.5e-26 124.0 226 39.8
Medtr2g038000 Medicago truncatula HOM05D002228 ORTHO05D002347 1.5e-26 124.0 231 36.4
arahy.Tifrunner.gnm1.ann1.XG21R6 Arachis hypogaea HOM05D002228 ORTHO05D002347 5.5e-26 122.1 226 39.4
Glyma.15G166200 Glycine max HOM05D002228 ORTHO05D002347 7.2e-26 121.7 235 35.7
Sopen07g004650 Solanum pennellii HOM05D002228 ORTHO05D002347 7.2e-26 121.7 226 37.2
Cc06_g20930 Coffea canephora HOM05D002228 ORTHO05D002347 1.2e-25 120.9 230 35.7
Glyma.13G100500 Glycine max HOM05D002228 ORTHO05D002347 1.6e-25 120.6 234 36.3
Peaxi162Scf01038g00149 Petunia axillaris HOM05D002228 ORTHO05D002347 1.6e-25 120.6 238 34.5
Solyc07g008730.2 Solanum lycopersicum HOM05D002228 ORTHO05D002347 1.4e-24 117.5 227 36.6
TAR625G1463 Trochodendron aralioides HOM05D002228 ORTHO05D002347 1.8e-24 117.1 280 34.6
Cpa.g.sc95.11 Carica papaya HOM05D002228 ORTHO05D002347 3.0e-24 116.3 79 75.9
Glyma.09G059700 Glycine max HOM05D002228 ORTHO05D002347 3.0e-24 116.3 228 34.6
Sabra06G0056400 Salix brachista HOM05D002228 ORTHO05D002347 3.0e-24 116.3 217 35.9
Psat1g144080 Pisum sativum HOM05D002228 ORTHO05D002347 4.0e-24 115.9 228 38.6
Dinv41174 Davidia involucrata HOM05D002228 ORTHO05D002347 5.2e-24 115.5 224 35.3
arahy.Tifrunner.gnm1.ann1.94M007 Arachis hypogaea HOM05D002228 ORTHO05D002347 1.1e-23 114.4 233 36.5
arahy.Tifrunner.gnm1.ann1.FZD5NS Arachis hypogaea HOM05D002228 ORTHO05D002347 1.1e-23 114.4 232 34.1
Oeu018818.1 Olea europaea HOM05D002228 ORTHO05D002347 1.1e-23 114.4 235 36.2
Lalb_Chr11g0074731 Lupinus albus HOM05D002228 ORTHO05D002347 2.6e-23 113.2 232 35.3
PGSC0003DMG400028740 Solanum tuberosum HOM05D002228 ORTHO05D002347 3.3e-23 112.8 225 35.1
SGA_v2.0_scaffold112G31576 Striga asiatica HOM05D002228 ORTHO05D002347 9.7e-23 111.3 239 33.9
Aqoxy7G02805 Aquilegia oxysepala HOM05D002228 ORTHO05D002347 2.2e-22 110.2 244 32.0
Migut.J00799 Erythranthe guttata HOM05D002228 ORTHO05D002347 2.2e-22 110.2 249 32.1
SHI02862 Sapria himalayana HOM05D002228 ORTHO05D002347 2.8e-22 109.8 228 36.8
DCAR_020149 Daucus carota HOM05D002228 ORTHO05D002347 8.2e-22 108.2 251 32.7
EL10Ac3g05517 Beta vulgaris HOM05D002228 ORTHO05D002347 1.4e-21 107.5 239 36.0
Sc07g0008910 Simmondsia chinensis HOM05D002228 ORTHO05D002347 4.1e-21 105.9 219 36.5
HanXRQChr03g0065511 Helianthus annuus HOM05D002228 ORTHO05D002347 9.1e-21 104.8 243 33.3
Ah.13g071300 Amaranthus hybridus HOM05D002228 ORTHO05D002347 1.6e-20 104.0 229 35.8
PSO170G5665 Papaver somniferum HOM05D002228 ORTHO05D002347 2.7e-20 103.2 237 33.3
Sed0028125 Sechium edule HOM05D002228 ORTHO05D002347 2.7e-20 103.2 94 61.7
THA.LOC104814652 Tarenaya hassleriana HOM05D002228 ORTHO05D002347 3.5e-20 102.8 230 33.0
A08p19490 Brassica napus HOM05D002228 ORTHO05D002347 1.7e-19 100.5 70 71.4
BraA08t33910Z Brassica rapa HOM05D002228 ORTHO05D002347 1.7e-19 100.5 70 71.4
BcaC01g01205 Brassica carinata HOM05D002228 ORTHO05D002347 2.9e-19 99.8 70 71.4
BolC3t21210H Brassica oleracea HOM05D002228 ORTHO05D002347 2.9e-19 99.8 70 71.4
PSO063G3334 Papaver somniferum HOM05D002228 ORTHO05D002347 2.9e-19 99.8 237 32.5
Dinv25444 Davidia involucrata HOM05D002228 ORTHO05D002347 8.5e-19 98.2 170 41.8
CARHR237860 Cardamine hirsuta HOM05D002228 ORTHO05D002347 1.1e-18 97.8 257 31.9
Thhalv10024489m.g Eutrema salsugineum HOM05D002228 ORTHO05D002347 1.5e-18 97.4 70 68.6
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 1.5e-18 97.4 166 39.2
C03p88990 Brassica napus HOM05D002228 ORTHO05D002347 1.9e-18 97.1 70 70.0
BcaC09g51766 Brassica carinata HOM05D002228 ORTHO05D002347 2.5e-18 96.7 70 67.1
C01p09130 Brassica napus HOM05D002228 ORTHO05D002347 2.5e-18 96.7 70 67.1
BolC1t00904H Brassica oleracea HOM05D002228 ORTHO05D002347 2.5e-18 96.7 70 67.1
ECA240G0470 Erigeron canadensis HOM05D002228 ORTHO05D002347 4.2e-18 95.9 242 33.1
A01p08160 Brassica napus HOM05D002228 ORTHO05D002347 7.2e-18 95.1 83 59.0
Carub.0007s1070 Capsella rubella HOM05D002228 ORTHO05D002347 7.2e-18 95.1 97 50.5
AT4G29940 Arabidopsis thaliana HOM05D002228 ORTHO05D002347 9.4e-18 94.7 70 65.7
unitig_9.g29493 Utricularia gibba HOM05D002228 ORTHO05D002347 9.4e-18 94.7 224 30.4
Lj5A615T13 Lonicera japonica HOM05D002228 ORTHO05D002347 1.2e-17 94.4 222 35.6
BraA01t00764Z Brassica rapa HOM05D002228 ORTHO05D002347 2.1e-17 93.6 105 50.5
Sp7g27750 Schrenkiella parvula HOM05D002228 ORTHO05D002347 2.1e-17 93.6 97 52.6
Hund11981 Selenicereus undatus HOM05D002228 ORTHO05D002347 2.1e-17 93.6 225 33.8
AL7G22300 Arabidopsis lyrata HOM05D002228 ORTHO05D002347 4.7e-17 92.4 70 62.9
Oeu014001.1 Olea europaea HOM05D002228 ORTHO05D002347 2.3e-16 90.1 62 67.7
Os02g0147800 Oryza sativa ssp. japonica HOM05D002228 ORTHO05D002347 6.8e-16 88.6 255 30.6
Aa31LG2G20610 Aethionema arabicum HOM05D002228 ORTHO05D002347 8.8e-16 88.2 70 61.4
AUR62016216 Chenopodium quinoa HOM05D002228 ORTHO05D002347 4.8e-14 82.4 231 31.2
Zm00001eb232240 Zea mays HOM05D002228 ORTHO05D002347 4.8e-14 82.4 76 56.6
Lsat_1_v5_gn_7_56301 Lactuca sativa HOM05D002228 ORTHO05D002347 6.3e-14 82.0 88 52.3
CDE02G1020 Ceratophyllum demersum HOM05D002228 ORTHO05D002347 1.1e-13 81.3 231 27.7
unitig_8.g4049 Utricularia gibba HOM05D002228 ORTHO05D002347 1.4e-13 80.9 212 28.8
ATR0626G154 Amborella trichopoda HOM05D002228 ORTHO05D002347 1.2e-12 77.8 55 69.1
HPP92_010285 Vanilla planifolia HOM05D002228 ORTHO05D002347 1.2e-12 77.8 236 32.6
AUR62039272 Chenopodium quinoa HOM05D002228 ORTHO05D002347 1.0e-11 74.7 230 29.6
Phvul.009G236200 Phaseolus vulgaris HOM05D002228 ORTHO05D002347 3.6e-09 66.2 44 77.3
HPP92_010400 Vanilla planifolia HOM05D002228 ORTHO05D002347 3.6e-09 66.2 49 61.2
SMO358G0261 Selaginella moellendorffii HOM05D002228 ORTHO05D002347 4.0e-08 62.8 60 53.3
Cpa.g.c34101 Carica papaya HOM05D002228 ORTHO05D002347 1.5e-07 60.8 92 38.0
MSTRG.20196 Avicennia marina HOM05D002228 ORTHO05D002347 3.4e-07 59.7 70 42.9
Hund00160 Selenicereus undatus HOM05D002228 ORTHO05D002347 2.2e-06 57.0 54 50.0


User provided reference genes

Program Settings