Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 6.0e-184 647.5 358 100.0
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 1.1e-76 291.2 401 46.1
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 1.4e-76 290.8 416 46.2
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 7.3e-73 278.5 407 49.6
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.1e-71 274.6 413 47.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 2.3e-71 273.5 410 48.8
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 2.6e-70 270.0 402 47.3
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 3.2e-68 263.1 414 44.9
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 4.6e-67 259.2 398 44.0
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 7.8e-67 258.5 383 47.0
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 1.0e-66 258.1 408 44.6
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.0e-66 258.1 397 48.1
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 6.6e-66 255.4 398 44.0
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.5e-65 254.2 395 43.5
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.3e-65 252.7 388 42.0
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 5.6e-65 252.3 410 42.0
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 9.5e-65 251.5 426 43.4
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 1.2e-64 251.1 400 41.2
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 3.6e-64 249.6 418 45.0
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 4.7e-64 249.2 389 45.2
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 4.7e-64 249.2 404 47.8
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 8.1e-64 248.4 379 50.4
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.1e-63 248.1 395 49.4
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.1e-63 248.1 400 45.0
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.8e-63 247.3 396 42.7
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 1.8e-63 247.3 416 44.7
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 3.1e-63 246.5 367 46.6
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.2e-62 244.6 409 39.6
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.2e-62 244.6 379 48.0
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 2.0e-62 243.8 423 43.7
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 2.0e-62 243.8 387 49.9
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 2.6e-62 243.4 409 41.8
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 9.9e-62 241.5 306 54.2
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 2.9e-61 240.0 405 46.2
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 6.4e-61 238.8 405 48.6
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 6.4e-61 238.8 465 42.6
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 8.4e-61 238.4 448 43.1
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 8.4e-61 238.4 409 39.6
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.4e-60 237.7 298 55.0
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 1.9e-60 237.3 382 50.8
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 3.2e-60 236.5 396 43.7
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 2.1e-59 233.8 409 42.8
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 7.8e-59 231.9 402 43.3
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.9e-58 229.6 393 44.3
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 1.1e-57 228.0 399 42.6
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 9.6e-57 224.9 391 43.7
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 9.6e-57 224.9 380 40.8
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.6e-56 224.2 301 51.5
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.1e-56 223.8 413 43.1
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 2.1e-56 223.8 427 40.5
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 2.4e-55 220.3 243 53.5
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 2.0e-54 217.2 439 39.6
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 3.4e-54 216.5 509 34.6
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 9.9e-54 214.9 434 39.6
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.3e-53 214.5 424 37.5
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.3e-53 214.5 455 41.1
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 4.9e-53 212.6 423 39.2
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 1.1e-52 211.5 411 44.3
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.4e-52 211.1 448 38.6
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 2.4e-52 210.3 424 39.2
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 2.4e-52 210.3 381 39.6
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 5.4e-52 209.1 403 41.7
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 3.5e-51 206.5 467 35.5
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.6e-51 206.1 227 49.3
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 6.0e-51 205.7 406 37.9
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 1.0e-50 204.9 275 53.5
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 1.3e-50 204.5 415 41.0
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 4.3e-49 199.5 303 47.2
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 5.6e-49 199.1 428 38.1
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 9.6e-49 198.4 224 54.9
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 3.1e-47 193.4 443 37.2
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.2e-46 191.4 459 38.1
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.5e-46 191.0 314 43.3
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 2.0e-46 190.7 411 37.7
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 2.6e-46 190.3 452 36.9
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 3.4e-46 189.9 300 41.3
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 9.9e-46 188.3 367 38.1
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 1.7e-45 187.6 468 35.7
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 2.2e-45 187.2 468 34.2
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.9e-45 186.8 298 43.0
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 3.8e-45 186.4 308 42.9
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.1e-44 184.9 314 39.2
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 7.1e-44 182.2 387 35.7
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 1.2e-43 181.4 262 48.5
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.2e-43 181.4 444 36.7
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.7e-43 180.3 218 51.8
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 3.9e-42 176.4 401 39.2
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 1.1e-39 168.3 390 38.5
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 2.6e-38 163.7 419 35.1
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 7.6e-38 162.2 347 35.7
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 1.3e-37 161.4 418 37.3
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-28 131.7 97 66.0
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.3e-24 118.2 346 37.6
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 1.5e-22 111.3 319 29.5
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 2.0e-22 110.9 212 40.6
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 5.9e-22 109.4 428 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 2.5e-20 104.0 141 41.1
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 2.5e-17 94.0 268 35.4
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.3e-15 86.3 63 61.9
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.3e-15 86.3 63 61.9
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.9e-13 80.5 210 35.7
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.8e-10 71.2 42 73.8
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.0e-10 70.5 43 72.1
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.2e-08 64.3 246 30.5
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.7e-08 63.5 45 62.2
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.7e-08 63.5 45 62.2
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 5.9e-06 56.2 72 37.5
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 7.7e-06 55.8 52 51.9


User provided reference genes

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