Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1602.0 815 100.0
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1179.1 673 87.8
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1154.0 672 86.3
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1147.1 676 85.5
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1145.2 675 84.6
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1144.4 673 85.1
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1140.9 669 85.9
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1140.9 675 84.7
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1140.2 673 85.1
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1137.9 662 86.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1137.5 666 85.7
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1136.7 666 85.6
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1136.7 675 83.7
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1133.2 675 84.7
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1132.9 672 84.8
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1130.5 669 84.8
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1130.5 673 84.1
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1128.2 673 83.4
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1127.5 672 83.5
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 675 82.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 676 83.0
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1122.1 675 83.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 674 82.9
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 674 83.7
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 675 83.0
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 669 83.6
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1109.0 677 81.7
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1108.2 676 82.5
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 674 81.6
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 672 82.9
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 701 80.0
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 679 81.9
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1103.2 672 82.7
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1103.2 670 82.5
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1102.8 673 82.6
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 661 82.6
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 671 81.8
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 671 82.3
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1098.6 664 83.1
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 691 80.6
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 648 84.1
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 648 84.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1091.3 661 82.0
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 671 81.2
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 676 80.6
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 662 82.2
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 672 81.0
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 663 82.1
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 671 80.9
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 644 84.3
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 681 81.1
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 710 78.0
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 663 81.6
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 689 80.4
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 677 79.8
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1077.4 675 80.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1076.6 657 82.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 3.9e-311 1071.2 662 80.5
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.1e-310 1069.7 677 78.9
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 5.5e-310 1067.4 662 80.4
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 5.5e-310 1067.4 662 80.1
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.1e-309 1065.4 685 79.4
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 3.6e-309 1064.7 664 79.2
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 6.1e-309 1063.9 664 79.1
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.8e-308 1062.4 673 79.8
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 8.8e-308 1060.1 663 79.0
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.2e-306 1055.4 664 78.3
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 3.7e-306 1054.7 667 79.0
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 6.3e-306 1053.9 673 78.0
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 6.3e-306 1053.9 678 77.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.4e-305 1052.7 669 80.3
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.5e-302 1042.7 686 76.7
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.4e-300 1036.2 672 77.4
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.4e-300 1036.2 695 75.1
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 3.7e-298 1028.1 759 71.8
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.4e-297 1026.2 648 77.2
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.0e-295 1020.0 640 79.4
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.9e-295 1018.5 733 72.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-288 996.5 698 73.9
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.0e-288 995.7 676 76.5
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.7e-288 993.8 644 77.8
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 8.0e-277 957.2 582 80.9
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 8.0e-277 957.2 669 74.1
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.1e-273 946.8 673 70.9
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.2e-269 933.3 674 72.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 4.7e-269 931.4 597 78.4
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 7.5e-267 924.1 644 70.8
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.7e-266 922.9 591 78.0
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.5e-262 909.1 654 72.3
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.8e-261 905.6 644 70.2
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 3.4e-259 898.7 675 70.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 4.9e-258 894.8 656 68.0
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.5e-256 888.6 637 73.2
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.0e-255 887.1 663 67.0
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 8.9e-252 874.0 509 83.7
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.7e-247 859.8 700 66.3
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.9e-244 847.8 700 65.1
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 3.0e-231 805.8 443 88.9
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.9e-209 733.4 466 74.9
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.6e-200 703.7 671 54.5
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 6.3e-181 638.6 375 86.7
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 8.0e-176 621.7 535 61.5
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.3e-175 620.2 382 78.8
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 5.7e-174 615.5 415 76.9
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.7e-173 614.0 634 51.7
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.1e-172 609.8 367 83.4
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 5.4e-172 609.0 642 52.3
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 5.0e-170 602.4 388 79.9
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 7.6e-142 508.8 367 72.5
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 7.1e-140 502.3 306 81.0
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.1e-135 488.4 305 79.7
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 6.8e-135 485.7 630 47.6
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.1e-132 478.4 304 78.6
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 2.4e-111 407.5 298 70.8
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 3.5e-107 393.7 467 50.5
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.0e-90 337.4 177 99.4
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.6e-83 315.1 216 75.0
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.1e-76 292.4 217 68.2
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 4.9e-56 223.8 243 56.0
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.9e-52 211.8 216 56.5
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 4.7e-51 207.2 246 49.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 8.9e-50 203.0 104 87.5
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-49 202.6 148 66.2
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 4.3e-36 157.5 150 58.0
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 7.3e-36 156.8 401 31.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.0e-33 148.7 469 31.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 5.8e-33 147.1 86 88.4
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.3e-32 146.0 101 73.3
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.7e-32 145.6 101 73.3
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.4e-31 142.5 101 72.3
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 9.2e-31 139.8 98 70.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.7e-29 135.6 86 79.1
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.4e-23 115.9 114 54.4
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 2.1e-19 102.1 68 79.4
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 2.1e-19 102.1 68 79.4
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 3.6e-19 101.3 82 68.3
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 6.2e-19 100.5 55 87.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.5e-17 95.9 54 85.2
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 7.6e-17 93.6 82 65.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-16 92.8 96 58.3
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 2.1e-14 85.5 49 87.8
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 3.5e-14 84.7 49 87.8
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.0e-13 83.2 63 74.6
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 1.9e-12 79.0 197 33.0
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 2.5e-12 78.6 98 52.0
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 6.2e-11 73.9 68 51.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 9.0e-10 70.1 105 44.8
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.0e-09 68.9 37 83.8
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.9e-07 62.4 68 50.0
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 3.2e-07 61.6 50 56.0
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 7.9e-06 57.0 33 84.8


User provided reference genes

Program Settings