Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1912.5 946 100.0
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1699.1 948 87.2
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1670.6 951 86.4
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1670.6 948 86.4
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1661.0 951 85.6
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1658.7 949 85.7
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1652.5 952 84.8
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1652.1 951 85.1
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1646.7 952 85.5
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1645.9 950 84.6
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1645.2 952 85.3
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1645.2 951 84.8
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1638.6 949 85.6
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1637.9 951 85.3
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1637.9 948 85.3
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1637.9 949 84.6
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1637.9 953 85.0
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1637.5 952 85.1
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1636.7 948 85.2
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1636.7 942 85.4
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1634.0 948 85.3
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1629.0 952 83.1
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1626.7 947 84.9
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1624.4 951 83.7
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1624.4 951 83.7
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1624.4 948 84.7
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1623.6 950 84.2
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1622.1 947 84.2
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1620.5 951 83.7
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1617.1 949 84.3
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1612.4 943 83.8
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1605.9 939 84.2
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1605.9 951 83.0
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1604.7 953 82.9
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1602.4 950 81.7
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1599.3 943 83.1
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1595.5 944 83.2
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1593.6 949 82.5
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1592.0 949 82.4
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1589.3 952 82.2
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1588.2 962 82.6
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1578.1 952 80.5
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1577.8 957 81.6
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 950 80.8
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 954 81.4
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 957 81.3
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1572.0 958 81.1
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1571.6 960 80.7
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1570.8 961 80.3
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1569.7 955 81.3
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 947 82.2
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 960 80.2
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1561.6 951 79.8
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 943 80.9
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 950 80.4
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1558.9 958 80.4
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 950 80.1
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1557.3 942 80.7
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1557.3 942 80.7
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 991 78.9
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 944 80.8
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 943 80.1
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 949 80.1
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 947 80.5
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 948 80.6
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 949 80.4
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1547.3 943 80.0
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 961 79.7
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1546.2 950 79.9
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 942 79.7
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1545.4 939 79.8
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1543.9 961 79.5
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 942 80.4
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 942 79.5
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 950 79.3
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1539.2 948 80.1
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1538.9 942 79.3
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1538.9 942 79.3
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1536.9 942 79.5
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1536.9 961 79.4
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 942 79.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 958 79.0
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1533.5 944 78.6
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 944 78.7
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 952 79.2
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 949 79.1
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 944 79.7
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 942 79.0
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1526.9 942 79.7
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1526.5 942 79.5
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1525.8 943 79.6
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1525.4 957 78.5
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 941 79.2
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 952 79.1
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 942 78.9
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1518.4 940 79.0
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1515.4 942 79.7
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 958 77.6
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 958 79.2
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 943 76.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1454.1 832 85.7
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1453.0 947 76.0
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1437.2 955 72.7
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1429.8 944 72.6
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1387.1 945 72.8
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1366.3 951 70.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1352.0 853 77.7
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1333.9 947 72.1
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1330.5 847 78.5
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1260.4 947 68.1
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1254.6 735 83.0
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1215.3 954 62.5
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1213.4 987 61.3
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1181.4 712 82.0
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1139.8 1014 56.8
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1127.9 941 61.0
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1103.6 670 81.0
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1092.4 652 82.2
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 1.2e-284 983.4 700 69.0
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 3.4e-234 815.8 992 44.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 2.9e-217 759.6 458 80.3
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.5e-186 657.5 439 72.9
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.8e-134 482.3 303 74.3
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.6e-114 418.3 1308 25.5
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 7.2e-112 409.5 646 38.5
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 4.7e-79 300.4 199 73.9
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 7.3e-72 276.6 209 67.9
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.6e-61 240.0 179 69.3
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 4.0e-54 217.6 300 43.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.8e-52 211.1 114 89.5
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 4.0e-46 191.0 123 74.0
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.7e-40 169.9 201 43.8
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 8.5e-36 156.8 139 61.2
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.6e-29 135.2 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 2.0e-16 92.4 80 62.5
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 1.4e-09 69.7 128 36.7
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 6.3e-07 60.8 100 41.0


User provided reference genes

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