Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 7.7e-229 797.0 451 100.0
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 9.1e-97 358.2 438 59.4
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.1e-81 308.1 459 46.2
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 4.7e-69 266.2 466 40.3
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.1e-68 265.0 466 41.8
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-65 254.2 473 41.0
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.5e-59 234.6 477 38.4
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.0e-59 234.2 454 39.0
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 7.5e-59 232.3 458 38.0
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 2.9e-58 230.3 313 51.4
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.9e-58 230.3 457 40.5
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 3.7e-58 229.9 476 39.1
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 4.9e-58 229.6 476 38.9
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 7.1e-57 225.7 456 37.1
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 2.7e-56 223.8 468 39.3
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 3.5e-56 223.4 475 40.8
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 1.0e-55 221.9 454 43.6
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 3.0e-55 220.3 465 35.7
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 3.9e-55 219.9 459 39.0
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.5e-54 217.2 456 36.0
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 4.3e-54 216.5 456 38.2
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 9.6e-54 215.3 457 37.4
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 9.6e-54 215.3 478 37.9
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 1.6e-53 214.5 474 35.7
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 6.2e-53 212.6 457 37.0
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 6.2e-53 212.6 465 36.6
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.1e-52 211.8 457 37.2
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 1.1e-52 211.8 468 40.0
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.4e-52 211.5 299 50.8
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 5.2e-52 209.5 456 37.7
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 1.2e-51 208.4 299 43.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 2.0e-51 207.6 307 49.8
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 4.4e-51 206.5 455 38.7
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 9.9e-51 205.3 470 41.3
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 6.4e-50 202.6 464 38.6
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 8.4e-50 202.2 208 56.7
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.9e-49 201.1 473 41.6
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 3.2e-49 200.3 460 42.4
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 7.1e-49 199.1 441 39.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 4.6e-48 196.4 301 47.2
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 7.8e-48 195.7 239 49.8
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 6.6e-47 192.6 471 34.4
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.9e-46 191.0 270 48.1
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 2.5e-46 190.7 295 46.8
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 4.3e-46 189.9 461 38.4
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 4.3e-46 189.9 450 36.7
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-45 188.0 389 37.3
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 3.6e-45 186.8 468 34.2
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.4e-44 184.9 453 35.1
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 1.4e-44 184.9 252 46.8
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.8e-44 184.5 254 44.5
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 5.3e-44 183.0 484 35.3
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 5.3e-44 183.0 548 30.8
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 9.0e-44 182.2 288 42.4
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 9.0e-44 182.2 487 35.9
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 9.9e-43 178.7 470 34.3
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 9.9e-43 178.7 304 43.8
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 9.9e-43 178.7 465 37.6
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 2.9e-42 177.2 263 44.9
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 3.8e-42 176.8 466 38.6
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 4.9e-42 176.4 458 32.8
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 8.4e-42 175.6 305 43.6
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 8.4e-42 175.6 468 34.2
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 1.1e-41 175.3 456 34.0
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.4e-41 174.1 478 34.5
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 5.4e-41 172.9 218 49.5
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.6e-40 171.4 453 34.2
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 2.1e-40 171.0 479 34.4
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 4.6e-40 169.9 475 38.9
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 4.6e-40 169.9 483 34.4
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 6.0e-40 169.5 482 34.4
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 3.0e-39 167.2 484 34.7
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 5.1e-39 166.4 470 32.8
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 6.6e-39 166.0 455 39.8
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 5.6e-38 162.9 456 33.3
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 1.6e-37 161.4 464 38.4
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.6e-37 161.4 467 34.3
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 2.1e-37 161.0 472 31.6
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 6.2e-37 159.5 458 36.9
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 2.4e-36 157.5 322 38.5
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 3.1e-36 157.1 467 35.8
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 9.0e-36 155.6 446 33.4
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 1.5e-35 154.8 273 41.0
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.0e-35 154.5 390 37.4
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 2.6e-35 154.1 459 34.4
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 3.4e-35 153.7 468 31.4
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 4.5e-35 153.3 468 31.4
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.8e-34 150.2 445 32.6
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 7.1e-33 146.0 478 31.4
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 7.9e-32 142.5 266 41.4
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 7.9e-32 142.5 391 32.2
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.4e-28 131.7 91 64.8
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 5.5e-25 119.8 279 37.3
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 7.1e-25 119.4 452 38.1
AUR62020753 Chenopodium quinoa HOM05D007201 ORTHO05D009122 2.7e-24 117.5 71 81.7
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 3.0e-23 114.0 450 30.0
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 3.0e-23 114.0 452 30.3
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 8.2e-21 105.9 187 39.6
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 3.1e-20 104.0 261 34.1
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.9e-15 87.0 56 67.9
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.9e-15 87.0 56 67.9
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 1.5e-14 85.1 322 29.2
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 8.8e-07 59.3 35 71.4
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.1e-06 58.9 36 69.4
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 9.7e-06 55.8 92 33.7


User provided reference genes

Program Settings