Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 3491.4 1792 100.0
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2808.9 1776 83.3
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2753.4 1741 83.5
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 2522.3 1852 73.6
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2474.5 1798 74.5
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2189.1 1574 73.3
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2179.1 1812 64.9
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2138.6 1811 63.7
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2137.5 1789 64.5
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2116.3 1675 67.1
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2108.2 1810 62.7
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2089.3 1813 63.0
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2088.9 1786 64.2
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2085.8 1779 63.6
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2081.6 1815 62.8
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2078.9 1793 63.1
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2077.4 1801 62.4
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2075.8 1812 61.9
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2055.8 1761 63.0
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2053.5 1813 60.7
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2053.1 1816 61.5
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2050.8 1788 62.0
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2048.9 1821 62.1
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2048.1 1812 61.8
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2035.4 1811 60.7
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2034.2 1811 60.6
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2026.1 1805 61.2
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2023.4 1879 60.0
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2021.1 1870 60.0
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2015.7 1818 61.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2014.6 1809 61.4
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2014.2 1818 60.9
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2013.4 1818 61.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2010.7 1787 62.1
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2005.7 1819 60.8
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1983.8 1806 60.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1979.9 1815 60.0
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1975.3 1815 59.9
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1974.9 1727 62.5
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1973.7 1797 59.8
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1973.4 1774 60.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1973.0 1781 60.5
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1968.4 1595 66.6
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1968.4 1812 59.6
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1963.7 1802 60.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1962.6 1832 59.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1958.7 1849 58.6
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1954.9 1818 60.1
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1951.4 1815 59.0
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1948.3 1756 59.5
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1945.6 1814 58.9
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1944.1 1823 59.0
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1939.1 1771 59.1
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1932.5 1784 58.9
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1928.7 1813 58.7
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1927.9 1781 58.7
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1911.7 1794 58.8
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1908.6 1791 58.9
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1906.3 1538 66.7
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1891.7 1751 58.5
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1888.6 1766 58.4
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1883.2 1818 57.6
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1877.4 1822 56.8
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1875.1 1813 56.6
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1873.6 1701 59.8
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1872.4 1790 58.0
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1865.9 1848 56.0
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1861.7 1804 56.5
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1852.0 1844 55.7
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1852.0 1844 55.7
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1846.6 1810 55.8
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1843.9 1841 55.5
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1839.7 1613 61.6
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1839.3 1799 56.3
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1839.3 1807 56.1
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1837.8 1851 55.6
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1837.8 1851 55.6
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1835.5 1837 56.5
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1833.2 1576 63.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1830.8 1806 56.1
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1829.7 1811 55.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1828.1 1761 57.4
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1813.1 1591 62.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1812.3 1814 55.3
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1790.4 1815 56.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1786.2 1700 58.3
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1723.8 1764 55.0
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1699.9 1856 53.6
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1644.8 1643 55.5
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1642.5 1622 55.4
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1612.8 1430 61.3
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1563.9 1696 51.9
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1552.7 1784 49.8
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1389.4 1346 57.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1318.1 1854 43.6
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1285.8 1671 45.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1265.4 1780 43.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1252.3 1769 43.2
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1224.9 1047 64.8
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1129.4 945 63.6
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1100.1 941 62.0
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.6e-306 1057.0 1111 52.7
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.4e-305 1053.1 1042 56.2
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.3e-282 977.6 1533 39.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.4e-278 964.1 999 54.3
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.4e-241 841.3 654 65.7
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 8.1e-221 772.3 732 57.4
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.8e-188 664.8 573 62.0
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.8e-175 621.7 833 45.0
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 1.1e-174 619.0 538 62.1
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 5.5e-153 547.0 639 51.3
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 7.9e-152 543.1 437 64.3
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.5e-145 520.4 663 45.1
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.1e-140 506.1 531 55.2
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.1e-140 506.1 517 54.5
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.0e-136 490.0 534 51.1
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 8.3e-125 453.4 582 47.3
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 2.0e-123 448.7 522 50.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 4.3e-113 414.5 496 49.4
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 7.5e-102 377.1 415 51.8
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.2e-94 353.2 386 48.7
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.2e-93 349.0 282 63.1
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.4e-92 344.4 347 55.0
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.1e-91 342.4 348 53.7
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.2e-88 333.2 291 61.9
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 6.2e-88 330.9 415 48.7
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.4e-78 298.5 265 61.1
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 5.1e-66 258.1 1619 22.8
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 2.7e-43 182.6 126 70.6
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 4.6e-43 181.8 193 51.8
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 6.1e-43 181.4 573 26.0
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.5e-37 161.0 289 38.1
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.5e-36 159.5 199 48.2
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 7.9e-35 154.5 200 44.5
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.9e-35 154.5 452 30.1
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 5.2e-34 151.8 217 39.6
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 5.3e-31 141.7 117 56.4
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 4.2e-28 132.1 96 69.8
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.4e-26 127.1 129 50.4
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.5e-25 123.6 94 68.1
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 7.5e-25 121.3 70 87.1
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 9.7e-25 120.9 95 66.3
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 5.3e-23 115.2 113 53.1
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 2.0e-22 113.2 79 65.8
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.9e-21 109.4 125 50.4
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.2e-20 105.5 78 65.4
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 2.3e-18 99.8 136 41.9
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 4.0e-18 99.0 174 37.4
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 3.7e-16 92.4 83 55.4
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.3e-16 91.3 116 49.1
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.0e-14 86.7 85 57.6
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.0e-14 86.7 59 72.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 3.5e-14 85.9 159 39.0
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.5e-14 85.5 85 56.5
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.1e-12 80.9 156 33.3
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.6e-11 77.0 61 60.7
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 4.7e-11 75.5 65 60.0
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 2.3e-10 73.2 184 31.5
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 3.4e-09 69.3 94 42.6
Ciclev10023419m.g Citrus clementina HOM05D000366 ORTHO05D000437 7.8e-06 58.2 50 44.0


User provided reference genes

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