Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.4e-189 665.6 409 100.0
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 8.4e-142 507.7 396 76.0
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 5.5e-141 505.0 423 67.6
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 7.9e-140 501.1 394 76.9
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 3.9e-139 498.8 425 67.1
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 4.8e-137 491.9 417 69.3
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 3.1e-136 489.2 396 69.2
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.5e-135 485.3 394 68.0
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 6.5e-134 481.5 394 70.6
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.4e-133 480.3 425 67.1
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.2e-133 478.8 394 69.3
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.2e-133 478.8 395 68.4
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 9.4e-133 477.6 396 69.4
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-132 476.5 432 65.3
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.7e-132 476.1 424 65.1
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 3.6e-132 475.7 423 65.7
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 6.1e-132 474.9 428 67.5
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.0e-131 474.2 440 65.2
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.0e-131 474.2 432 66.7
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.8e-131 473.4 426 62.4
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.8e-131 473.4 426 66.4
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.3e-131 473.0 440 65.0
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 3.9e-131 472.2 411 65.0
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 3.9e-131 472.2 393 64.9
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 5.1e-131 471.9 418 66.3
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 5.1e-131 471.9 419 64.7
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.1e-130 470.7 420 67.9
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 2.5e-130 469.5 391 68.5
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 5.7e-130 468.4 422 64.7
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 7.4e-130 468.0 393 67.7
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 9.7e-130 467.6 416 63.2
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.7e-130 467.6 435 63.4
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 9.7e-130 467.6 389 68.1
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 2.2e-129 466.5 392 68.9
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-129 466.1 435 63.2
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 3.7e-129 465.7 419 63.0
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 4.8e-129 465.3 394 67.3
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.8e-129 465.3 435 63.2
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 6.3e-129 464.9 430 61.2
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 6.3e-129 464.9 423 67.1
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.3e-128 461.8 424 65.3
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.2e-127 460.7 389 68.4
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 1.2e-127 460.7 417 64.3
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.5e-127 460.3 403 64.8
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.5e-127 460.3 417 64.0
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 2.0e-127 459.9 431 64.3
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 2.6e-127 459.5 418 65.8
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 3.4e-127 459.1 422 60.4
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 5.9e-127 458.4 391 66.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.9e-127 458.4 396 66.7
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.9e-127 458.4 397 66.2
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 7.7e-127 458.0 421 66.5
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 7.7e-127 458.0 389 64.3
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.7e-126 456.8 425 64.7
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 5.0e-126 455.3 426 65.5
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.2e-125 452.2 397 66.0
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.2e-124 450.7 401 63.3
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.7e-124 449.5 431 63.3
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 3.6e-124 449.1 418 63.9
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 1.4e-123 447.2 391 62.7
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 3.0e-123 446.0 403 61.5
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 5.1e-123 445.3 396 63.6
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 8.8e-123 444.5 394 64.2
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.1e-122 444.1 397 68.3
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 5.7e-122 441.8 426 59.9
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 9.7e-122 441.0 420 61.9
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 2.2e-121 439.9 393 65.4
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 4.8e-121 438.7 388 62.4
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 6.3e-121 438.3 399 62.9
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 5.3e-120 435.3 390 62.6
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.0e-119 433.3 414 59.7
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.0e-119 433.3 391 62.4
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 3.2e-117 426.0 422 61.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 5.5e-117 425.2 374 65.8
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 3.6e-116 422.5 417 61.4
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 1.8e-115 420.2 303 72.3
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 3.0e-115 419.5 386 61.7
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 3.0e-115 419.5 385 61.0
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 8.8e-115 417.9 386 62.7
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.1e-114 417.5 303 71.9
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 5.7e-114 415.2 397 63.0
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.3e-113 414.1 399 61.9
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.2e-113 413.3 300 71.7
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.8e-113 412.9 382 59.7
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 8.2e-113 411.4 297 72.4
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.1e-112 411.0 386 60.9
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 2.4e-112 409.8 419 57.0
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.1e-112 409.5 397 63.0
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 5.3e-112 408.7 308 70.5
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 5.3e-112 408.7 383 59.5
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.5e-111 406.0 399 60.2
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 1.0e-110 404.4 392 64.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.0e-110 404.4 395 63.8
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.3e-110 404.1 396 56.1
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.0e-110 402.1 415 60.0
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 6.5e-110 401.7 384 60.2
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.1e-109 401.0 401 63.1
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.9e-109 400.2 401 62.8
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.5e-109 399.8 406 61.3
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 3.6e-108 396.0 397 55.7
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.4e-107 394.0 389 60.4
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.0e-103 380.2 385 57.7
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.8e-99 367.1 362 56.1
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.8e-99 365.2 363 55.4
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.1e-96 355.9 384 54.2
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 8.0e-92 341.7 382 50.0
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.3e-91 340.1 381 54.1
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.8e-88 330.5 211 78.7
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 3.5e-87 326.2 442 50.5
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.5e-85 320.9 423 49.2
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.8e-83 313.9 424 50.5
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 6.8e-83 312.0 265 61.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.6e-76 289.7 359 50.4
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 5.6e-69 265.8 325 48.9
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.2e-68 264.6 149 83.2
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 2.1e-68 263.8 281 61.6
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.2e-66 258.1 134 91.0
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.7e-65 254.2 338 46.2
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.6e-63 247.7 276 55.8
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.3e-62 243.8 247 54.7
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.6e-58 228.8 158 72.2
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.2e-55 221.5 115 91.3
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 7.8e-55 218.8 160 70.0
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 1.5e-53 214.5 155 70.3
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 3.1e-43 180.3 159 59.1
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 2.0e-42 177.6 96 87.5
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-41 174.9 103 81.6
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.6e-39 167.9 156 52.6
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.3e-38 164.1 282 44.3
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.1e-37 161.8 399 37.8
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 4.5e-34 149.8 240 42.1
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.6e-26 124.0 116 56.0
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.8e-25 120.2 64 85.9
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-24 118.6 64 84.4
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.1e-24 118.6 64 84.4
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.5e-24 116.3 64 82.8
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 7.2e-24 115.9 97 61.9
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.6e-23 113.2 175 44.0
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 7.9e-23 112.5 68 80.9
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.3e-22 111.7 68 79.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.5e-21 108.2 66 78.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.9e-21 107.8 68 77.9
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 2.2e-20 104.4 155 48.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.0e-18 97.8 159 44.0
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 5.0e-17 93.2 138 46.4
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.6e-15 88.2 106 48.1
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 7.7e-10 69.3 47 68.1
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 7.7e-10 69.3 47 68.1
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.0e-06 58.9 45 68.9


User provided reference genes

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