Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1318.5 677 100.0
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1236.5 677 92.9
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1143.3 677 85.2
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1141.3 669 86.2
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1134.4 677 85.7
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1125.2 678 83.8
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 0.0e+00 1124.8 698 84.8
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 671 84.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 677 82.7
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1117.1 673 84.0
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1114.0 669 83.6
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1112.4 677 83.6
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1110.9 677 83.3
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 675 82.8
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 677 82.9
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 678 83.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 667 83.4
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1106.3 667 83.2
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 677 82.3
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 674 82.8
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 667 83.1
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1102.4 679 82.5
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1100.9 674 82.6
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 674 81.8
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 677 81.8
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 673 81.7
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 668 82.0
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 672 82.4
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 671 82.0
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1089.3 677 82.1
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1089.3 677 81.4
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 671 81.7
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 677 81.2
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 673 81.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 673 81.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1083.6 663 82.8
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1083.6 674 81.8
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1083.6 677 80.9
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 674 80.7
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 676 80.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 679 80.3
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 684 80.0
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1076.2 677 79.8
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1075.5 675 80.3
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 675 80.1
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 677 80.2
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 663 81.4
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 704 78.1
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 4.2e-311 1070.8 664 81.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 9.3e-311 1069.7 664 80.9
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 1.2e-310 1069.3 663 81.4
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 2.7e-310 1068.1 663 81.3
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 7.8e-310 1066.6 674 80.0
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 3.0e-309 1064.7 666 80.9
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 2.5e-308 1061.6 711 76.5
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 4.3e-308 1060.8 670 79.6
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 5.6e-308 1060.4 679 80.3
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 7.3e-308 1060.1 689 78.7
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 9.5e-308 1059.7 692 77.5
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 9.5e-308 1059.7 649 81.7
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 9.5e-308 1059.7 649 81.7
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 1.2e-307 1059.3 664 80.1
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 2.1e-307 1058.5 664 79.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 3.6e-307 1057.7 646 82.2
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 8.1e-307 1056.6 670 79.4
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.1e-306 1056.2 692 79.0
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 6.8e-306 1053.5 697 77.8
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 2.0e-305 1052.0 677 79.8
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 3.4e-305 1051.2 683 78.5
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 4.4e-305 1050.8 690 78.3
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 6.4e-304 1047.0 706 76.2
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.4e-304 1047.0 674 78.5
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 5.1e-301 1037.3 679 79.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 8.6e-301 1036.6 665 78.0
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 6.2e-299 1030.4 761 73.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 3.1e-298 1028.1 731 73.6
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.5e-297 1025.8 671 77.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.3e-293 1012.7 643 79.0
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 6.6e-293 1010.4 648 77.9
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 7.1e-287 990.3 678 76.4
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.0e-282 973.4 658 76.4
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 6.4e-280 967.2 677 75.5
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 9.0e-274 946.8 676 74.1
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 1.7e-272 942.6 584 81.5
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.5e-268 929.5 669 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 3.7e-267 924.9 647 71.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 2.4e-266 922.2 599 78.5
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 7.6e-265 917.1 592 78.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 7.4e-260 900.6 669 68.8
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 3.7e-259 898.3 656 72.6
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.7e-259 898.3 672 68.0
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 3.1e-258 895.2 654 70.2
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 5.0e-256 887.9 677 70.2
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.6e-254 882.9 511 85.9
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.5e-248 860.9 637 70.6
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.1e-247 860.1 702 65.4
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.1e-242 843.6 701 64.3
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.0e-225 786.2 445 87.4
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 2.0e-204 716.5 464 76.1
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.2e-196 690.6 667 54.9
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.9e-183 646.7 535 65.4
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 8.7e-176 621.3 382 79.3
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 1.5e-175 620.5 667 50.8
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 6.9e-173 611.7 367 83.7
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 7.6e-172 608.2 651 52.1
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 6.7e-168 595.1 373 82.0
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.7e-166 589.3 367 82.3
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.2e-166 588.6 388 79.1
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 8.5e-147 525.0 308 84.7
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.4e-144 517.7 367 74.4
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.7e-139 500.7 615 51.2
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.0e-136 490.0 310 78.4
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.7e-134 484.2 309 78.6
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.8e-117 427.6 299 74.2
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 5.2e-112 409.5 467 53.1
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.1e-81 307.8 218 73.4
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.2e-78 297.7 219 70.3
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 7.6e-63 246.1 178 70.8
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 8.4e-62 242.7 234 60.3
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.9e-51 207.2 248 50.0
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.1e-50 205.7 104 90.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-50 205.3 224 52.7
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.9e-50 204.9 220 54.5
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 6.9e-40 169.9 401 34.4
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 7.6e-39 166.4 167 57.5
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.7e-34 149.4 546 30.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 2.8e-33 147.9 114 71.1
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.2e-30 138.3 87 79.3
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.9e-30 137.9 87 79.3
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.5e-29 134.8 87 78.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 3.0e-27 127.9 86 76.7
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 6.7e-27 126.7 98 64.3
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.4e-21 109.0 113 51.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 6.1e-20 103.6 82 72.0
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 3.9e-19 100.9 96 61.5
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 5.1e-19 100.5 55 89.1
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.5e-18 99.0 68 73.5
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 2.0e-18 98.6 82 64.6
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.3e-18 97.8 68 72.1
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.1e-16 90.9 197 36.0
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 5.3e-16 90.5 54 83.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.3e-14 85.9 49 85.7
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 6.5e-14 83.6 49 83.7
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 8.5e-14 83.2 63 73.0
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 2.1e-12 78.6 68 54.4
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 6.1e-12 77.0 84 53.6
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.3e-11 75.1 105 46.7
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.3e-10 71.2 67 55.2
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 8.2e-09 66.6 37 83.8
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 7.0e-08 63.5 46 73.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.0e-07 62.0 46 60.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 2.6e-07 61.6 44 61.4
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 1.0e-06 59.7 33 87.9
arahy.Tifrunner.gnm1.ann1.NDK424 Arachis hypogaea HOM05D000919 ORTHO05D014896 5.0e-06 57.4 58 58.6
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 8.5e-06 56.6 40 65.0


User provided reference genes

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