Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 3.0e-87 325.5 205 100.0
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.8e-79 299.7 205 86.8
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 9.0e-76 287.3 205 89.8
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.4e-73 280.0 199 85.9
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.0e-71 273.9 198 81.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 3.0e-71 272.3 200 81.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 86.5
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 86.5
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 86.5
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 83.5
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 5.1e-71 271.6 205 86.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 5.1e-71 271.6 200 80.0
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.1e-70 270.4 203 78.3
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.1e-70 270.4 198 81.3
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 2.5e-70 269.2 200 87.0
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 2.5e-70 269.2 200 82.5
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 3.3e-70 268.9 201 79.1
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 4.3e-70 268.5 198 81.3
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 4.3e-70 268.5 205 83.4
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 5.6e-70 268.1 200 85.5
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 7.4e-70 267.7 203 79.8
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 7.4e-70 267.7 198 80.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 7.4e-70 267.7 198 80.8
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 7.4e-70 267.7 200 79.5
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 7.4e-70 267.7 201 87.6
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 7.4e-70 267.7 201 80.1
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 9.6e-70 267.3 200 87.0
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 9.6e-70 267.3 200 87.0
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.6e-69 266.5 198 80.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.1e-69 266.2 200 84.0
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.8e-69 265.8 202 78.7
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.8e-69 265.8 199 83.4
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.7e-69 265.4 198 88.4
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.7e-69 265.4 199 87.4
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 3.7e-69 265.4 197 81.7
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 6.2e-69 264.6 200 84.5
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 6.2e-69 264.6 200 80.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 6.2e-69 264.6 201 86.6
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 8.1e-69 264.2 198 80.3
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 8.1e-69 264.2 199 83.4
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 8.1e-69 264.2 200 86.5
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.1e-68 263.8 200 78.0
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.1e-68 263.8 200 81.5
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.4e-68 263.5 201 79.6
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.4e-68 263.5 206 78.6
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.8e-68 263.1 205 82.9
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 2.4e-68 262.7 200 86.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 3.1e-68 262.3 197 87.8
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.1e-68 262.3 204 82.4
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 4.0e-68 261.9 198 80.3
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.3e-68 261.5 205 77.6
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.3e-68 261.5 205 77.6
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.9e-68 261.2 198 86.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.2e-67 260.4 199 81.9
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-67 260.4 200 78.5
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.5e-67 260.0 196 78.6
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-67 260.0 205 77.1
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.5e-67 260.0 200 85.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.5e-67 260.0 204 75.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.5e-67 260.0 206 77.7
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.5e-67 260.0 206 77.7
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.5e-67 260.0 198 78.3
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 3.4e-67 258.8 199 83.4
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 3.4e-67 258.8 206 77.2
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.8e-67 258.1 203 77.8
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 5.8e-67 258.1 197 82.7
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 5.8e-67 258.1 201 85.6
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 7.6e-67 257.7 204 80.9
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.7e-66 256.5 204 79.9
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 2.2e-66 256.1 199 74.9
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.9e-66 255.8 198 79.8
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.9e-66 255.8 204 75.0
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.9e-66 255.8 197 78.7
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 3.8e-66 255.4 204 80.4
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 3.8e-66 255.4 195 83.1
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 4.9e-66 255.0 200 84.0
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 6.5e-66 254.6 246 66.7
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.1e-65 253.8 204 73.5
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.1e-65 253.8 200 79.5
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.4e-65 253.4 204 79.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.9e-65 253.1 200 77.0
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.9e-65 253.1 201 84.1
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.9e-65 253.1 204 76.5
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-65 253.1 201 82.1
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-65 253.1 201 82.1
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.5e-65 252.7 199 77.4
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 5.5e-65 251.5 194 84.0
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 3.5e-64 248.8 200 77.0
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 7.9e-64 247.7 159 90.6
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.0e-63 247.3 201 75.6
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 2.3e-63 246.1 203 75.9
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.5e-62 243.4 205 73.2
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.5e-62 242.7 204 75.0
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 4.3e-62 241.9 205 73.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.7e-62 241.5 204 74.5
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.3e-61 240.4 201 79.1
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.3e-61 240.4 201 77.6
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-60 237.3 159 89.3
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.1e-60 237.3 200 74.0
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.8e-60 236.5 213 61.0
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 4.1e-60 235.3 157 84.1
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.2e-59 233.8 282 51.1
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 2.0e-59 233.0 199 71.9
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.5e-59 231.9 198 81.8
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.0e-58 230.7 198 72.2
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 5.0e-58 228.4 197 78.2
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.5e-57 226.1 268 57.5
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.4e-52 210.3 300 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.6e-51 206.1 150 68.0
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.8e-50 202.2 201 65.7
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 4.2e-49 198.7 206 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 9.4e-49 197.6 146 66.4
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.1e-48 194.9 195 67.2
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 7.9e-48 194.5 104 91.3
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 1.0e-47 194.1 213 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.3e-47 193.0 133 71.4
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 5.1e-47 191.8 225 68.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.5e-46 190.3 205 60.0
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 9.1e-44 181.0 150 78.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.2e-41 172.6 146 67.1
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.0e-39 166.0 123 85.4
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.3e-37 160.6 212 55.2
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 4.1e-36 155.6 135 60.7
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.9e-35 151.8 225 56.9
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.7e-35 151.4 123 66.7
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.8e-34 149.1 284 51.4
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.7e-32 142.9 230 47.4
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 3.6e-32 142.5 202 48.0
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.8e-23 111.7 159 44.0
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 7.5e-22 108.2 212 42.5
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.0e-19 100.1 96 78.1
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 2.7e-19 99.8 91 80.2
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 2.1e-16 90.1 206 35.0
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 3.1e-12 76.3 46 84.8
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.8e-07 60.5 165 24.8


User provided reference genes

Program Settings