Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 4.0e-250 867.8 511 100.0
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 1.6e-198 696.4 516 81.2
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 9.4e-191 670.6 524 73.1
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.5e-167 593.6 435 75.2
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 3.6e-166 589.0 501 67.1
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 3.0e-165 585.9 439 74.5
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 5.2e-165 585.1 444 74.3
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.1e-162 577.4 518 64.1
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 6.6e-160 568.2 524 68.1
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.9e-159 566.6 514 65.8
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 1.9e-159 566.6 439 71.5
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 3.3e-159 565.8 407 75.2
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 3.3e-159 565.8 446 70.6
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 4.7e-158 562.0 404 74.5
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 6.2e-158 561.6 442 71.9
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 6.2e-158 561.6 429 74.8
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.8e-157 560.1 410 71.7
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.3e-157 559.7 448 70.1
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.2e-156 557.4 445 70.1
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 2.9e-155 552.7 437 72.8
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 3.7e-155 552.4 446 69.1
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 4.1e-154 548.9 450 70.4
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 7.0e-154 548.1 438 70.8
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 9.2e-154 547.7 450 67.8
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.2e-153 547.4 456 67.8
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.2e-153 547.4 437 71.9
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 2.7e-153 546.2 486 65.4
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.7e-152 543.5 447 67.8
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 3.0e-152 542.7 445 68.5
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.9e-152 542.3 447 67.8
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.5e-151 540.4 447 67.3
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.5e-151 540.4 453 67.8
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 3.3e-151 539.3 402 70.9
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 3.3e-151 539.3 439 70.6
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.1e-150 536.6 449 66.4
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 3.6e-150 535.8 449 67.5
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 2.3e-149 533.1 446 67.3
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.5e-148 530.4 450 65.3
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 2.0e-148 530.0 447 66.9
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 2.6e-148 529.6 399 72.7
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 2.6e-148 529.6 399 72.4
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 3.4e-148 529.3 444 66.2
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 7.5e-148 528.1 445 65.6
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.3e-147 527.3 449 67.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.7e-147 525.8 445 67.6
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 3.7e-147 525.8 448 67.9
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 4.9e-147 525.4 468 64.3
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.4e-146 523.9 448 66.1
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 2.4e-146 523.1 401 71.6
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 4.1e-146 522.3 445 64.9
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 4.1e-146 522.3 444 64.0
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.1e-145 520.0 450 66.2
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 7.8e-145 518.1 457 60.4
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 7.8e-145 518.1 446 65.2
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.0e-144 517.7 448 66.3
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 1.7e-144 516.9 448 66.3
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.5e-143 513.8 445 64.0
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 5.6e-143 511.9 445 65.2
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 7.3e-143 511.5 383 72.6
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 1.2e-142 510.8 404 68.3
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 1.6e-142 510.4 445 64.3
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 2.1e-142 510.0 509 61.7
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 3.6e-142 509.2 444 64.4
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 6.2e-142 508.4 445 63.8
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 6.2e-142 508.4 541 53.6
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 1.4e-141 507.3 453 65.3
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.8e-141 506.9 442 65.2
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 5.8e-140 501.9 443 65.9
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 7.6e-140 501.5 447 64.4
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.7e-139 500.4 399 69.2
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 6.4e-139 498.4 444 66.4
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 8.4e-139 498.0 445 64.7
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.4e-138 497.3 452 66.2
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 3.2e-138 496.1 430 66.7
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 1.6e-137 493.8 453 63.1
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 2.1e-137 493.4 505 59.4
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 3.5e-137 492.7 398 67.6
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.7e-136 490.3 452 63.5
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 1.6e-134 483.8 500 54.2
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.1e-134 483.4 455 59.1
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 8.1e-134 481.5 399 66.2
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.4e-133 480.7 487 58.9
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 1.7e-131 473.8 378 70.1
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 8.4e-131 471.5 394 68.0
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.1e-130 471.1 449 56.3
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 1.9e-130 470.3 445 62.9
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 2.7e-129 466.5 423 65.0
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.6e-128 461.8 419 60.9
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.1e-126 456.8 445 53.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 6.2e-126 455.3 450 57.6
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 6.2e-126 455.3 444 58.1
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 1.8e-125 453.8 405 64.2
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 4.0e-125 452.6 456 59.2
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 9.0e-125 451.4 450 54.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.6e-124 449.9 385 62.3
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.9e-122 443.7 387 61.0
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 2.1e-121 440.3 384 62.5
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 4.6e-121 439.1 384 62.2
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.8e-120 437.2 447 58.2
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 1.8e-120 437.2 448 57.1
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 1.8e-120 437.2 386 62.4
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 2.3e-120 436.8 384 62.2
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 2.3e-120 436.8 448 56.9
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 1.5e-119 434.1 384 62.2
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 3.3e-119 433.0 384 61.5
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 3.3e-119 433.0 448 56.5
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 9.6e-119 431.4 447 56.4
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.7e-118 429.5 471 51.6
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.8e-117 427.2 401 54.4
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 5.3e-117 425.6 356 71.3
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 8.4e-115 418.3 504 56.0
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.4e-114 417.5 419 57.8
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.8e-112 410.6 454 55.5
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 4.8e-110 402.5 441 55.6
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.3e-104 384.4 459 51.4
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.9e-103 380.6 471 51.0
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 5.9e-84 315.8 411 48.7
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 9.4e-82 308.5 261 57.9
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.1e-79 301.6 523 43.6
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.4e-69 267.3 186 70.4
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 1.2e-68 265.0 483 35.2
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 9.4e-66 255.4 202 63.9
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 8.6e-59 232.3 475 38.3
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 1.3e-51 208.4 279 43.7
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 3.0e-48 197.2 226 47.3
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 3.7e-46 190.3 404 32.4
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 8.6e-43 179.1 255 42.0
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.1e-25 121.3 516 24.0
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 1.4e-21 108.6 129 43.4
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 9.6e-18 95.9 127 44.1
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 2.1e-17 94.7 82 53.7
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 2.8e-17 94.4 80 55.0
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 1.9e-13 81.6 165 35.8
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 1.0e-11 75.9 166 31.3
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.1e-10 72.4 129 34.1
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 1.3e-06 58.9 118 31.4
Ciclev10031507m.g Citrus clementina HOM05D000453 ORTHO05D000387 3.8e-06 57.4 144 29.9
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 4.9e-06 57.0 243 29.6
QL10p012364 Quercus lobata HOM05D000453 ORTHO05D000387 6.4e-06 56.6 149 28.2


User provided reference genes

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