Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 0.0e+00 1248.4 667 100.0
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.2e-177 627.5 713 55.4
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 6.4e-131 472.2 648 48.3
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 3.4e-84 317.0 619 38.8
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 3.2e-82 310.5 781 34.3
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.2e-78 297.7 754 34.7
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 2.8e-78 297.4 720 34.7
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.4e-77 294.3 705 34.3
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 7.0e-77 292.7 757 32.6
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.0e-76 291.2 721 33.3
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 3.5e-76 290.4 696 35.5
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 5.0e-75 286.6 778 33.5
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.9e-74 284.6 399 44.9
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 4.2e-74 283.5 743 33.0
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 4.2e-74 283.5 701 32.4
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 9.4e-74 282.3 689 35.6
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.4e-72 278.5 691 31.8
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.8e-72 278.1 698 35.2
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 5.2e-72 276.6 724 34.1
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.5e-71 275.0 796 31.8
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 6.3e-70 269.6 735 33.6
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 1.8e-69 268.1 714 33.5
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 2.4e-69 267.7 721 33.0
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 2.4e-69 267.7 714 33.8
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 4.1e-69 266.9 727 32.5
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 5.3e-69 266.5 675 34.1
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 7.0e-69 266.2 739 33.0
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.2e-68 265.4 731 31.3
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.7e-68 264.2 721 32.9
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 4.5e-68 263.5 723 31.5
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 4.5e-68 263.5 698 33.0
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.3e-67 261.9 706 32.3
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 2.9e-67 260.8 808 32.3
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 8.5e-67 259.2 746 32.4
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 1.5e-66 258.5 791 32.2
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 1.5e-66 258.5 716 32.1
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 2.5e-66 257.7 709 33.1
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.2e-65 255.4 711 32.6
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 2.7e-65 254.2 685 32.7
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 6.1e-65 253.1 714 32.5
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 1.8e-64 251.5 793 31.0
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 2.3e-64 251.1 600 34.2
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.5e-63 248.4 773 32.3
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 2.6e-63 247.7 705 32.8
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.6e-63 247.7 709 31.3
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.3e-62 245.4 692 30.8
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.7e-62 245.0 689 32.1
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 2.2e-62 244.6 693 31.5
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 3.7e-62 243.8 722 33.7
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 4.8e-62 243.4 783 30.9
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 4.8e-62 243.4 762 31.2
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 6.3e-62 243.0 743 31.6
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 8.3e-62 242.7 717 31.4
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 3.1e-61 240.7 703 32.7
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.2e-60 238.8 316 47.2
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 1.6e-60 238.4 757 30.8
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 2.7e-60 237.7 741 31.3
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 3.5e-60 237.3 730 30.1
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 3.5e-60 237.3 724 32.6
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 1.9e-58 231.5 754 30.4
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 9.5e-58 229.2 792 30.7
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 9.5e-58 229.2 703 31.7
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.2e-57 228.8 746 29.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.2e-57 228.8 699 32.3
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 2.8e-57 227.6 752 28.9
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 2.8e-57 227.6 710 31.1
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.8e-57 227.6 688 29.7
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 3.6e-57 227.3 748 29.5
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 4.7e-57 226.9 709 30.0
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 6.1e-57 226.5 795 29.4
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 1.2e-55 222.2 740 28.8
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.4e-55 220.7 786 29.6
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.4e-55 220.7 705 29.8
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 3.7e-54 217.2 820 29.8
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 4.1e-53 213.8 375 40.8
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 1.2e-52 212.2 706 30.6
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 1.6e-52 211.8 434 35.7
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.6e-52 211.8 709 30.7
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 1.6e-52 211.8 421 34.9
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 2.7e-52 211.1 709 29.9
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.3e-51 208.8 589 30.7
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 1.3e-51 208.8 448 36.6
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 3.8e-51 207.2 742 28.0
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 3.3e-50 204.1 705 29.5
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.6e-49 201.8 710 29.3
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.1e-49 201.4 509 32.2
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 2.8e-49 201.1 789 27.8
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 1.0e-48 199.1 788 27.8
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.2e-47 195.7 457 34.6
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 3.4e-47 194.1 481 33.1
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 4.4e-47 193.7 651 30.4
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 7.5e-47 193.0 484 33.7
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 6.4e-46 189.9 670 28.8
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.6e-44 185.3 695 27.3
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 5.6e-42 176.8 224 44.6
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 7.5e-39 166.4 267 41.2
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 2.9e-38 164.5 338 37.9
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.2e-36 159.1 207 44.0
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 1.7e-35 155.2 633 27.6
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 6.6e-35 153.3 182 49.5
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.1e-32 146.0 319 33.5
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 7.5e-31 139.8 148 55.4
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 2.2e-30 138.3 353 31.2
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.6e-28 132.1 99 64.6
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 4.6e-28 130.6 114 59.6
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 1.5e-26 125.6 697 25.3
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 3.3e-26 124.4 170 47.6
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 9.5e-26 122.9 295 33.6
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 9.9e-23 112.8 183 39.3
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.7e-19 102.1 118 48.3
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 5.2e-16 90.5 62 71.0
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 3.9e-11 74.3 146 40.4
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 5.1e-11 73.9 120 43.3
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 8.7e-11 73.2 83 53.0
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 8.7e-11 73.2 83 53.0
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 1.5e-10 72.4 73 47.9
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 2.5e-10 71.6 68 58.8
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 1.1e-08 66.2 75 44.0
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 1.8e-08 65.5 244 29.1
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 4.0e-08 64.3 174 33.9
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 3.4e-07 61.2 74 44.6
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 7.6e-07 60.1 510 26.1
Cre14.g633400 Chlamydomonas reinhardtii HOM05D006136 ORTHO05D007244 2.2e-06 58.5 121 29.8
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 4.9e-06 57.4 139 34.5


User provided reference genes

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