Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1447 Erigeron canadensis HOM05D000104 ORTHO05D011991 0.0e+00 2982.6 1719 100.0
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 2.7e-88 332.0 1255 35.5
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 1.7e-82 312.8 1078 36.3
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 4.9e-50 204.9 214 51.9
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 3.8e-42 178.7 285 48.4
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 4.9e-42 178.3 285 48.4
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.4e-41 176.8 293 43.0
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 2.4e-41 176.0 286 50.0
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 2.7e-40 172.6 274 48.5
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 1.3e-39 170.2 291 41.6
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.8e-39 169.9 285 47.4
COL.COLO4_25220 Corchorus olitorius HOM05D000104 ORTHO05D005604 6.7e-39 167.9 286 41.6
Hma1.2p1_0728F.1_g209240 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 6.7e-39 167.9 226 48.7
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 6.7e-39 167.9 285 44.2
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 1.9e-38 166.4 530 32.6
vmacro04192 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 2.5e-38 166.0 273 46.5
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 5.6e-38 164.9 273 42.9
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 1.3e-37 163.7 288 44.1
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 2.8e-37 162.5 286 39.5
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 1.1e-36 160.6 288 38.9
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 2.4e-36 159.5 286 41.6
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 2.4e-36 159.5 288 41.7
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.1e-36 159.1 272 42.6
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 3.1e-36 159.1 222 53.2
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 4.0e-36 158.7 283 39.6
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 9.0e-36 157.5 223 47.1
Gohir.A09G233000 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.2e-35 157.1 285 40.0
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 1.2e-35 157.1 283 42.8
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 3.4e-35 155.6 295 42.4
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 4.5e-35 155.2 132 62.9
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 4.5e-35 155.2 286 40.2
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 4.5e-35 155.2 274 39.8
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 5.8e-35 154.8 286 40.6
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 7.6e-35 154.5 295 42.7
AUR62040387 Chenopodium quinoa HOM05D000104 ORTHO05D005604 7.6e-35 154.5 209 45.9
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 1.0e-34 154.1 279 40.9
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 1.0e-34 154.1 143 58.7
Oeu037653.1 Olea europaea HOM05D000104 ORTHO05D011991 1.0e-34 154.1 277 40.4
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 2.2e-34 152.9 201 44.3
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 2.2e-34 152.9 202 47.0
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 3.8e-34 152.1 775 31.4
AUR62042659 Chenopodium quinoa HOM05D000104 ORTHO05D005604 3.8e-34 152.1 209 45.5
Ah.13g074430 Amaranthus hybridus HOM05D000104 ORTHO05D005604 6.5e-34 151.4 247 40.1
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 8.4e-34 151.0 216 46.8
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 8.4e-34 151.0 307 41.7
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 1.1e-33 150.6 292 44.9
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 1.9e-33 149.8 278 41.7
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 2.5e-33 149.4 298 39.9
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 3.2e-33 149.1 305 44.9
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 4.2e-33 148.7 803 30.0
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 7.1e-33 147.9 297 42.1
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 9.3e-33 147.5 285 38.2
arahy.Tifrunner.gnm1.ann1.TJR5LV Arachis hypogaea HOM05D000160 ORTHO05D000914 9.3e-33 147.5 285 38.2
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 2.1e-32 146.4 280 40.7
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 2.1e-32 146.4 232 40.9
Lsat_1_v5_gn_9_3120 Lactuca sativa HOM05D003230 ORTHO05D011991 3.5e-32 145.6 92 75.0
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 3.5e-32 145.6 145 56.6
Oeu007474.1 Olea europaea HOM05D000104 ORTHO05D005604 4.6e-32 145.2 273 39.2
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 1.0e-31 144.1 259 40.2
Eucgr.E01764 Eucalyptus grandis HOM05D000104 ORTHO05D005604 1.0e-31 144.1 208 43.3
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 2.3e-31 142.9 237 50.2
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 3.0e-31 142.5 129 58.9
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 3.0e-31 142.5 277 37.5
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 1.1e-30 140.6 149 51.7
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.9e-30 139.8 929 27.1
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 9.6e-30 137.5 127 57.5
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 1.6e-29 136.7 278 36.7
TAR365G0019 Trochodendron aralioides HOM05D000104 ORTHO05D011991 8.2e-29 134.4 266 42.9
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 4.1e-28 132.1 772 34.1
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 4.1e-28 132.1 292 42.8
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 1.5e-27 130.2 107 60.7
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 3.4e-27 129.0 592 31.4
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 5.9e-27 128.3 928 26.2
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.3e-26 127.1 922 26.0
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 5.0e-26 125.2 147 53.7
MBI19_g34714_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 8.5e-26 124.4 142 47.2
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.4e-25 123.6 929 26.5
Lj1C356T7 Lonicera japonica HOM05D000104 ORTHO05D011991 4.2e-25 122.1 193 40.4
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 2.3e-23 116.3 137 49.6
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 1.9e-22 113.2 130 50.8
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 4.3e-22 112.1 96 62.5
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 1.3e-21 110.5 899 26.1
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 4.1e-20 105.5 104 53.8
Cc00_g02400 Coffea canephora HOM05D000104 ORTHO05D011991 5.3e-20 105.1 97 56.7
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 3.4e-19 102.4 993 26.3
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 1.0e-18 100.9 92 62.0
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.7e-18 100.1 954 24.7
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 5.0e-18 98.6 1312 26.5
Ciclev10004115m.g Citrus clementina HOM05D000104 ORTHO05D005604 4.2e-17 95.5 1279 24.5
SEGI_16038 Sequoiadendron giganteum HOM05D000104 ORTHO05D005604 7.2e-17 94.7 143 44.8
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 1.8e-15 90.1 248 42.3
CSS0040868 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 3.9e-15 89.0 1513 26.0
Pp3c14_90 Physcomitrium patens HOM05D000104 ORTHO05D005604 1.1e-14 87.4 122 43.4
Mapoly0171s0025 Marchantia polymorpha HOM05D000104 ORTHO05D005604 5.7e-14 85.1 246 30.1
AagrBONN_evm.TU.Sc2ySwM_368.1449 Anthoceros agrestis HOM05D000104 ORTHO05D005604 4.8e-13 82.0 133 43.6
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 1.1e-12 80.9 808 25.1
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 3.1e-12 79.3 1356 25.9
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 2.2e-10 73.2 1222 24.9
Dinv36279 Davidia involucrata HOM05D000104 ORTHO05D005604 2.5e-09 69.7 1420 23.4
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 3.2e-09 69.3 1823 22.2
SMO367G0295 Selaginella moellendorffii HOM05D000104 ORTHO05D005604 7.2e-09 68.2 104 39.4
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 3.6e-08 65.9 1354 24.2
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 4.7e-08 65.5 1861 23.0
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 7.9e-08 64.7 1370 22.3
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 2.0e-06 60.1 1298 24.8
Haze_01046 Corylus avellana HOM05D000104 ORTHO05D005604 5.7e-06 58.5 1636 22.8
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 7.4e-06 58.2 1569 22.6


User provided reference genes

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