Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2204 Erigeron canadensis HOM05D000688 ORTHO05D187695 6.2e-57 223.8 104 100.0
vmacro01621 Vaccinium macrocarpon HOM05D000688 ORTHO05D003888 1.1e-24 116.7 89 65.2
Lsat_1_v5_gn_7_12221 Lactuca sativa HOM05D000688 ORTHO05D003888 7.6e-23 110.5 53 94.3
ECA236G1694 Erigeron canadensis HOM05D000688 ORTHO05D003888 8.4e-22 107.1 53 92.5
HanXRQChr04g0119821 Helianthus annuus HOM05D000688 ORTHO05D003888 8.4e-22 107.1 53 92.5
Rhsim11G0122400 Rhododendron simsii HOM05D000688 ORTHO05D003888 1.4e-21 106.3 153 42.5
HanXRQChr06g0183351 Helianthus annuus HOM05D000688 ORTHO05D003888 2.5e-21 105.5 53 88.7
Gohir.A05G399000 Gossypium hirsutum HOM05D000688 ORTHO05D003888 3.2e-21 105.1 53 88.7
Gorai.012G019600 Gossypium raimondii HOM05D000688 ORTHO05D003888 3.2e-21 105.1 53 88.7
Gohir.A11G004600 Gossypium hirsutum HOM05D000688 ORTHO05D003888 4.2e-21 104.8 53 86.8
Gorai.007G005200 Gossypium raimondii HOM05D000688 ORTHO05D003888 4.2e-21 104.8 53 86.8
Solyc10g078880.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 4.2e-21 104.8 53 88.7
Cc04_g08900 Coffea canephora HOM05D000688 ORTHO05D003888 5.5e-21 104.4 53 90.6
SalBow4G1891 Salvia bowleyana HOM05D000688 ORTHO05D003888 5.5e-21 104.4 53 90.6
SalBow5G4138 Salvia bowleyana HOM05D000688 ORTHO05D003888 5.5e-21 104.4 53 90.6
Gohir.D04G016900 Gossypium hirsutum HOM05D000688 ORTHO05D003888 7.2e-21 104.0 53 86.8
Gohir.D11G004000 Gossypium hirsutum HOM05D000688 ORTHO05D003888 9.3e-21 103.6 53 84.9
Oeu006782.2 Olea europaea HOM05D000688 ORTHO05D003888 1.2e-20 103.2 53 88.7
Migut.B01181 Erythranthe guttata HOM05D000688 ORTHO05D003888 1.6e-20 102.8 53 88.7
COL.COLO4_05983 Corchorus olitorius HOM05D000688 ORTHO05D003888 2.1e-20 102.4 53 86.8
COL.COLO4_19613 Corchorus olitorius HOM05D000688 ORTHO05D003888 2.1e-20 102.4 53 86.8
Sc14g0004780 Simmondsia chinensis HOM05D000688 ORTHO05D003888 2.1e-20 102.4 53 88.7
Sopen10g029500 Solanum pennellii HOM05D000688 ORTHO05D003888 2.7e-20 102.1 53 84.9
MSTRG.20498 Avicennia marina HOM05D000688 ORTHO05D003888 3.5e-20 101.7 53 86.8
Duzib106G0735 Durio zibethinus HOM05D000688 ORTHO05D003888 3.5e-20 101.7 53 86.8
Migut.B01180 Erythranthe guttata HOM05D000688 ORTHO05D003888 3.5e-20 101.7 53 86.8
Potri.015G003000 Populus trichocarpa HOM05D000688 ORTHO05D003888 3.5e-20 101.7 53 86.8
Nn2g14058 Nelumbo nucifera HOM05D000688 ORTHO05D003888 4.6e-20 101.3 53 84.9
Thecc.10G140700 Theobroma cacao HOM05D000688 ORTHO05D003888 4.6e-20 101.3 53 84.9
CAN.G11758.1 Capsicum annuum HOM05D000688 ORTHO05D003888 6.1e-20 100.9 53 86.8
CAN.G960.3 Capsicum annuum HOM05D000688 ORTHO05D003888 6.1e-20 100.9 53 86.8
Lj3C924G6 Lonicera japonica HOM05D000688 ORTHO05D003888 6.1e-20 100.9 53 86.8
PGR031G2689 Punica granatum HOM05D000688 ORTHO05D003888 6.1e-20 100.9 53 86.8
Solyc10g078860.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 6.1e-20 100.9 53 86.8
Sopen10g029490 Solanum pennellii HOM05D000688 ORTHO05D003888 6.1e-20 100.9 53 86.8
PGSC0003DMG400011445 Solanum tuberosum HOM05D000688 ORTHO05D003888 6.1e-20 100.9 53 86.8
SGA_v2.0_scaffold195G40824 Striga asiatica HOM05D000688 ORTHO05D003888 1.0e-19 100.1 53 84.9
SGA_v2.0_scaffold375G50252 Striga asiatica HOM05D000688 ORTHO05D003888 1.0e-19 100.1 53 84.9
TAR376G0407 Trochodendron aralioides HOM05D000688 ORTHO05D003888 1.0e-19 100.1 53 86.8
Atru.chr4.3095 Acer truncatum HOM05D000688 ORTHO05D003888 1.3e-19 99.8 53 84.9
PGSC0003DMG400011444 Solanum tuberosum HOM05D000688 ORTHO05D003888 1.3e-19 99.8 53 84.9
Aa31LG9G7980 Aethionema arabicum HOM05D000688 ORTHO05D003888 1.8e-19 99.4 53 86.8
EL10Ac1g01996 Beta vulgaris HOM05D000688 ORTHO05D003888 1.8e-19 99.4 53 84.9
Ciclev10000078m.g Citrus clementina HOM05D000688 ORTHO05D003888 1.8e-19 99.4 53 84.9
Dinv01617 Davidia involucrata HOM05D000688 ORTHO05D003888 1.8e-19 99.4 53 86.8
Nitab4.5_0000105g0140 Nicotiana tabacum HOM05D000688 ORTHO05D003888 1.8e-19 99.4 53 84.9
Nitab4.5_0004643g0010 Nicotiana tabacum HOM05D000688 ORTHO05D003888 1.8e-19 99.4 53 84.9
DCAR_012513 Daucus carota HOM05D000688 ORTHO05D003888 2.3e-19 99.0 53 84.9
DCAR_022371 Daucus carota HOM05D000688 ORTHO05D003888 2.3e-19 99.0 53 84.9
CSS0019460 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003888 3.0e-19 98.6 53 86.8
CAN.G960.5 Capsicum annuum HOM05D000688 ORTHO05D003888 3.0e-19 98.6 53 83.0
THA.LOC104811399 Tarenaya hassleriana HOM05D000688 ORTHO05D003888 3.0e-19 98.6 53 84.9
Atru.chr12.1245 Acer truncatum HOM05D000688 ORTHO05D003888 3.9e-19 98.2 53 83.0
CsaV3_7G035430 Cucumis sativus L. HOM05D000688 ORTHO05D003888 3.9e-19 98.2 53 83.0
Sed0017010 Sechium edule HOM05D000688 ORTHO05D003888 3.9e-19 98.2 53 83.0
GSVIVG01036597001 Vitis vinifera HOM05D000688 ORTHO05D003888 3.9e-19 98.2 53 84.9
CDE04G0541 Ceratophyllum demersum HOM05D000688 ORTHO05D003888 5.1e-19 97.8 53 81.1
ATR0609G055 Amborella trichopoda HOM05D000688 ORTHO05D003888 6.7e-19 97.4 53 81.1
AUR62013825 Chenopodium quinoa HOM05D000688 ORTHO05D003888 6.7e-19 97.4 53 83.0
AUR62036901 Chenopodium quinoa HOM05D000688 ORTHO05D003888 6.7e-19 97.4 53 83.0
Ca_23464_v3 Cicer arietinum L. HOM05D000688 ORTHO05D003888 8.7e-19 97.1 53 84.9
Peaxi162Scf00003g04511 Petunia axillaris HOM05D000688 ORTHO05D003888 8.7e-19 97.1 53 84.9
Peaxi162Scf01517g00143 Petunia axillaris HOM05D000688 ORTHO05D003888 8.7e-19 97.1 53 86.8
RcHm_v2.0_Chr1g0327591 Rosa chinensis HOM05D000688 ORTHO05D003888 8.7e-19 97.1 53 84.9
MELO3C024455.2 Cucumis melo HOM05D000688 ORTHO05D003888 1.1e-18 96.7 53 81.1
Hma1.2p1_1730F.1_g299620 Hydrangea macrophylla HOM05D000688 ORTHO05D003888 1.1e-18 96.7 53 86.8
Psat4g164800 Pisum sativum HOM05D000688 ORTHO05D003888 1.1e-18 96.7 53 84.9
arahy.Tifrunner.gnm1.ann1.W6893Z Arachis hypogaea HOM05D000688 ORTHO05D003888 1.5e-18 96.3 53 84.9
CAN.G960.34 Capsicum annuum HOM05D000688 ORTHO05D003888 1.5e-18 96.3 53 81.1
ClCG07G000010 Citrullus lanatus HOM05D000688 ORTHO05D003888 1.5e-18 96.3 53 81.1
RcHm_v2.0_Chr7g0227611 Rosa chinensis HOM05D000688 ORTHO05D003888 1.5e-18 96.3 53 83.0
HPP92_018385 Vanilla planifolia HOM05D000688 ORTHO05D003888 1.5e-18 96.3 53 83.0
Ah.01g004280 Amaranthus hybridus HOM05D000688 ORTHO05D003888 1.9e-18 95.9 53 83.0
FvH4_7g03930 Fragaria vesca HOM05D000688 ORTHO05D003888 1.9e-18 95.9 53 83.0
FAN01G1250 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.9e-18 95.9 53 83.0
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.9e-18 95.9 53 83.0
FAN06G4099 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.9e-18 95.9 53 83.0
Manes.04G155900 Manihot esculenta HOM05D000688 ORTHO05D003888 2.5e-18 95.5 53 83.0
Medtr8g023445 Medicago truncatula HOM05D000688 ORTHO05D003888 2.5e-18 95.5 53 84.9
Os03g0403100 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D003888 2.5e-18 95.5 53 83.0
MD14G1029000 Malus domestica HOM05D000688 ORTHO05D003888 3.3e-18 95.1 53 83.0
arahy.Tifrunner.gnm1.ann1.RHTP8A Arachis hypogaea HOM05D000688 ORTHO05D003888 4.3e-18 94.7 53 84.9
BolC2t10650H Brassica oleracea HOM05D000688 ORTHO05D003888 4.3e-18 94.7 89 58.4
Prupe.2G044100 Prunus persica HOM05D000688 ORTHO05D003888 5.7e-18 94.4 53 81.1
unitig_22.g5333 Utricularia gibba HOM05D000688 ORTHO05D003888 5.7e-18 94.4 53 83.0
BcaC06g34487 Brassica carinata HOM05D000688 ORTHO05D003888 7.4e-18 94.0 53 84.9
C07p27930 Brassica napus HOM05D000688 ORTHO05D003888 7.4e-18 94.0 53 84.9
PSO339G4862 Papaver somniferum HOM05D000688 ORTHO05D003888 7.4e-18 94.0 53 81.1
PSO384G1949 Papaver somniferum HOM05D000688 ORTHO05D003888 7.4e-18 94.0 53 81.1
Zm00001eb269100 Zea mays HOM05D000688 ORTHO05D003888 7.4e-18 94.0 53 79.2
CANSAT21G2099 Cannabis sativa HOM05D000688 ORTHO05D003888 9.7e-18 93.6 53 83.0
FAN13G2193 Fragaria x ananassa HOM05D000688 ORTHO05D003888 9.7e-18 93.6 53 79.2
TWI63G1180 Tripterygium wilfordii HOM05D000688 ORTHO05D003888 9.7e-18 93.6 53 83.0
Aqoxy3G02794 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 1.3e-17 93.2 53 79.2
Aqoxy4G01311 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 1.3e-17 93.2 53 79.2
Aqoxy6G00568 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 1.3e-17 93.2 53 79.2
TPR.G29748 Trifolium pratense HOM05D000688 ORTHO05D003888 1.3e-17 93.2 53 81.1
Haze_02986 Corylus avellana HOM05D000688 ORTHO05D003888 1.6e-17 92.8 53 81.1
Lj5g0025980 Lotus japonicus HOM05D000688 ORTHO05D003888 1.6e-17 92.8 53 81.1
Thecc.05G157400 Theobroma cacao HOM05D000688 ORTHO05D003888 1.6e-17 92.8 53 79.2
Lj3g0004991 Lotus japonicus HOM05D000688 ORTHO05D003888 2.2e-17 92.4 53 79.2
CAN.G960.24 Capsicum annuum HOM05D000688 ORTHO05D003888 2.8e-17 92.0 53 79.2
Phvul.004G175000 Phaseolus vulgaris HOM05D000688 ORTHO05D003888 2.8e-17 92.0 53 81.1
VMungo0464G0248 Vigna mungo HOM05D000688 ORTHO05D003888 2.8e-17 92.0 53 81.1
QL05p086812 Quercus lobata HOM05D000688 ORTHO05D003888 3.7e-17 91.7 53 79.2
QL05p087326 Quercus lobata HOM05D000688 ORTHO05D003888 3.7e-17 91.7 53 79.2
Lalb_Chr01g0000861 Lupinus albus HOM05D000688 ORTHO05D003888 4.8e-17 91.3 53 81.1
AT5G45140 Arabidopsis thaliana HOM05D000688 ORTHO05D003888 6.3e-17 90.9 53 81.1
A06p46750 Brassica napus HOM05D000688 ORTHO05D003888 6.3e-17 90.9 53 83.0
BraA06t27547Z Brassica rapa HOM05D000688 ORTHO05D003888 6.3e-17 90.9 53 83.0
QL05p086414 Quercus lobata HOM05D000688 ORTHO05D003888 6.3e-17 90.9 53 79.2
AL8G14060 Arabidopsis lyrata HOM05D000688 ORTHO05D003888 8.2e-17 90.5 53 81.1
BcaB07g30474 Brassica carinata HOM05D000688 ORTHO05D003888 1.1e-16 90.1 53 81.1
Thhalv10000748m.g Eutrema salsugineum HOM05D000688 ORTHO05D003888 1.1e-16 90.1 53 81.1
FvH4_5g31720 Fragaria vesca HOM05D000688 ORTHO05D003888 1.1e-16 90.1 53 79.2
FAN18G2226 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.1e-16 90.1 53 79.2
PSO478G2833 Papaver somniferum HOM05D000688 ORTHO05D003888 1.1e-16 90.1 53 79.2
SMO171G0074 Selaginella moellendorffii HOM05D000688 ORTHO05D003888 1.1e-16 90.1 53 81.1
TPR.G26445 Trifolium pratense HOM05D000688 ORTHO05D003888 1.1e-16 90.1 53 79.2
Glyma.01G006500 Glycine max HOM05D000688 ORTHO05D003888 1.4e-16 89.7 53 79.2
Glyma.07G125300 Glycine max HOM05D000688 ORTHO05D003888 1.4e-16 89.7 53 79.2
Sp2g09970 Schrenkiella parvula HOM05D000688 ORTHO05D003888 1.4e-16 89.7 53 79.2
BcaNung00311 Brassica carinata HOM05D000688 ORTHO05D003888 1.8e-16 89.4 56 76.8
Pp3c18_11070 Physcomitrium patens HOM05D000688 ORTHO05D003888 1.8e-16 89.4 53 79.2
QL05p087226 Quercus lobata HOM05D000688 ORTHO05D003888 1.8e-16 89.4 53 77.4
Carub.0008s0305 Capsella rubella HOM05D000688 ORTHO05D003888 2.4e-16 89.0 53 79.2
Cre12.g542800 Chlamydomonas reinhardtii HOM05D000688 ORTHO05D003888 6.9e-16 87.4 53 77.4
Mapoly0097s0027 Marchantia polymorpha HOM05D000688 ORTHO05D003888 6.9e-16 87.4 53 75.5
AagrBONN_evm.TU.Sc2ySwM_344.1343 Anthoceros agrestis HOM05D000688 ORTHO05D003888 1.2e-15 86.7 53 73.6
CARHR177390 Cardamine hirsuta HOM05D000688 ORTHO05D003888 1.5e-15 86.3 53 77.4
CARHR110560 Cardamine hirsuta HOM05D000688 ORTHO05D003888 2.0e-15 85.9 53 75.5
CiPaw.14G009900 Carya illinoinensis HOM05D000688 ORTHO05D003888 3.4e-15 85.1 53 75.5
CAN.G960.35 Capsicum annuum HOM05D000688 ORTHO05D003888 4.5e-15 84.7 45 84.4
A02p28860 Brassica napus HOM05D000688 ORTHO05D003888 5.9e-15 84.3 56 73.2
BcaC03g16725 Brassica carinata HOM05D000688 ORTHO05D003888 1.3e-14 83.2 56 73.2
C02p45870 Brassica napus HOM05D000688 ORTHO05D003888 1.3e-14 83.2 56 73.2
Sabra15G0001900 Salix brachista HOM05D000688 ORTHO05D003888 1.9e-13 79.3 70 55.7
TPR.G16357 Trifolium pratense HOM05D000688 ORTHO05D003888 3.2e-13 78.6 53 67.9
FAN04G0523 Fragaria x ananassa HOM05D000688 ORTHO05D003888 5.5e-13 77.8 48 75.0
Peaxi162Scf00304g10014 Petunia axillaris HOM05D000688 ORTHO05D003888 8.2e-09 63.9 39 74.4
MCO04G463 Micromonas commoda HOM05D000688 ORTHO05D003888 1.8e-08 62.8 53 58.5
CAN.G960.25 Capsicum annuum HOM05D000688 ORTHO05D003888 3.4e-07 58.5 28 92.9
Cfa026358 Carpinus fangiana HOM05D000688 ORTHO05D003888 3.8e-06 55.1 52 51.9


User provided reference genes

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