Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 8.2e-109 397.1 208 100.0
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 4.9e-29 132.1 99 64.6
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 1.3e-26 124.0 127 55.1
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 3.0e-18 96.3 92 51.1
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 5.1e-18 95.5 90 50.0
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 6.6e-18 95.1 85 51.8
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 8.7e-18 94.7 118 41.5
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 8.7e-18 94.7 88 52.3
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 8.7e-18 94.7 88 51.1
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 1.1e-17 94.4 89 49.4
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 1.9e-17 93.6 89 47.2
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.9e-17 93.6 90 47.8
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 2.5e-17 93.2 88 54.5
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 2.5e-17 93.2 88 47.7
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 4.3e-17 92.4 90 51.1
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 4.3e-17 92.4 87 51.7
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 5.6e-17 92.0 137 38.7
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 5.6e-17 92.0 89 49.4
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 9.6e-17 91.3 89 48.3
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 1.3e-16 90.9 99 46.5
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.3e-16 90.9 92 47.8
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 1.3e-16 90.9 87 52.9
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 1.3e-16 90.9 89 46.1
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.6e-16 90.5 90 50.0
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 1.6e-16 90.5 89 47.2
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.1e-16 90.1 85 47.1
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 2.8e-16 89.7 142 38.0
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 3.6e-16 89.4 90 46.7
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 3.6e-16 89.4 90 46.7
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 4.8e-16 89.0 90 46.7
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 4.8e-16 89.0 89 51.7
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 6.2e-16 88.6 90 47.8
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.1e-15 87.8 90 46.7
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 1.4e-15 87.4 93 45.2
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 1.4e-15 87.4 89 46.1
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.8e-15 87.0 95 48.4
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 1.8e-15 87.0 90 47.8
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 2.4e-15 86.7 85 48.2
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 2.4e-15 86.7 87 48.3
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.4e-15 86.7 92 47.8
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 2.4e-15 86.7 94 48.9
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 2.4e-15 86.7 87 46.0
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 2.4e-15 86.7 93 50.5
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 3.1e-15 86.3 89 44.9
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 4.0e-15 85.9 134 36.6
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.0e-15 85.9 85 50.6
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 4.0e-15 85.9 89 46.1
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.3e-15 85.5 85 50.6
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.3e-15 85.5 85 50.6
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 6.9e-15 85.1 86 46.5
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.9e-15 85.1 92 46.7
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 6.9e-15 85.1 85 50.6
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 9.0e-15 84.7 85 47.1
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 9.0e-15 84.7 83 47.0
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 9.0e-15 84.7 109 45.0
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 1.2e-14 84.3 92 46.7
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 1.2e-14 84.3 90 42.2
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.5e-14 84.0 85 48.2
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.5e-14 84.0 88 45.5
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 1.5e-14 84.0 97 42.3
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 2.0e-14 83.6 92 46.7
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.6e-14 83.2 81 49.4
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 2.6e-14 83.2 90 45.6
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 3.4e-14 82.8 82 47.6
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 3.4e-14 82.8 82 47.6
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.4e-14 82.8 88 48.9
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 3.4e-14 82.8 88 46.6
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 3.4e-14 82.8 85 49.4
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 4.5e-14 82.4 95 48.4
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 5.8e-14 82.0 88 44.3
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 7.6e-14 81.6 87 49.4
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 7.6e-14 81.6 85 48.2
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 9.9e-14 81.3 84 50.0
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 9.9e-14 81.3 81 45.7
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 9.9e-14 81.3 133 37.6
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 9.9e-14 81.3 143 34.3
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 9.9e-14 81.3 90 41.1
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 1.3e-13 80.9 85 47.1
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 1.3e-13 80.9 96 42.7
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 1.3e-13 80.9 96 42.7
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 1.3e-13 80.9 96 42.7
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 1.7e-13 80.5 84 51.2
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.7e-13 80.5 83 47.0
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 1.7e-13 80.5 90 45.6
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 1.7e-13 80.5 86 48.8
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 2.2e-13 80.1 89 42.7
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 2.9e-13 79.7 82 48.8
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 2.9e-13 79.7 90 44.4
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.9e-13 79.7 90 43.3
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.8e-13 79.3 90 44.4
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 3.8e-13 79.3 88 46.6
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 3.8e-13 79.3 90 48.9
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 3.8e-13 79.3 76 50.0
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 4.9e-13 79.0 82 46.3
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 4.9e-13 79.0 85 47.1
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 4.9e-13 79.0 82 43.9
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 4.9e-13 79.0 89 42.7
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 6.4e-13 78.6 90 45.6
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 6.4e-13 78.6 85 44.7
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 8.4e-13 78.2 91 42.9
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.4e-13 78.2 85 44.7
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 1.1e-12 77.8 140 35.7
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 1.1e-12 77.8 85 47.1
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 1.1e-12 77.8 85 47.1
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.1e-12 77.8 87 44.8
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.4e-12 77.4 85 43.5
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.4e-12 77.4 85 44.7
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 1.4e-12 77.4 90 47.8
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.4e-12 77.4 85 42.4
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.4e-12 77.4 85 42.4
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.9e-12 77.0 87 41.4
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 1.9e-12 77.0 123 37.4
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 1.9e-12 77.0 123 37.4
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 1.9e-12 77.0 83 43.4
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.9e-12 77.0 85 44.7
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 1.9e-12 77.0 87 46.0
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 2.4e-12 76.6 88 45.5
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 2.4e-12 76.6 93 44.1
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 2.4e-12 76.6 90 42.2
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 3.2e-12 76.3 87 44.8
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 3.2e-12 76.3 92 43.5
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 4.2e-12 75.9 85 44.7
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 4.2e-12 75.9 85 43.5
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 5.4e-12 75.5 83 45.8
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 5.4e-12 75.5 83 48.2
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 5.4e-12 75.5 90 41.1
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 7.1e-12 75.1 83 45.8
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 7.1e-12 75.1 85 43.5
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.2e-11 74.3 90 37.8
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 2.1e-11 73.6 86 43.0
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.1e-11 73.6 86 43.0
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 2.7e-11 73.2 85 40.0
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 2.7e-11 73.2 87 42.5
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 3.5e-11 72.8 90 40.0
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 3.5e-11 72.8 160 31.2
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 4.6e-11 72.4 82 45.1
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 7.9e-11 71.6 87 42.5
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 7.9e-11 71.6 90 37.8
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.0e-10 71.2 88 38.6
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 1.0e-10 71.2 85 40.0
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.0e-10 71.2 86 41.9
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.3e-10 70.9 89 37.1
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 1.3e-10 70.9 85 40.0
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.3e-10 70.9 83 42.2
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.8e-10 70.5 86 39.5
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.8e-10 70.5 85 43.5
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.3e-10 70.1 85 43.5
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 2.3e-10 70.1 83 41.0
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 2.3e-10 70.1 90 38.9
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 3.0e-10 69.7 86 45.3
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 3.9e-10 69.3 82 40.2
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 6.7e-10 68.6 83 41.0
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 6.7e-10 68.6 90 35.6
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 1.5e-09 67.4 84 42.9
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.5e-09 67.4 83 41.0
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 4.3e-09 65.9 88 38.6
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 5.6e-09 65.5 181 31.5
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 5.6e-09 65.5 88 40.9
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 1.3e-08 64.3 84 41.7
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.7e-08 62.8 102 34.3
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 3.1e-07 59.7 125 31.2
SEGI_19919 Sequoiadendron giganteum HOM05D000399 ORTHO05D010012 5.3e-07 58.9 85 37.6
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 9.0e-07 58.2 57 49.1
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 1.2e-06 57.8 90 37.8
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 2.0e-06 57.0 60 51.7
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 4.5e-06 55.8 57 49.1


User provided reference genes

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