Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 3.3e-194 681.8 416 100.0
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.0e-186 656.0 416 93.5
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.4e-184 649.8 417 89.7
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.5e-181 637.9 416 89.4
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.2e-180 636.7 416 89.2
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.6e-180 636.3 416 89.2
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.8e-179 630.6 419 82.6
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-178 630.2 419 89.5
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.4e-171 606.7 417 86.3
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 2.0e-170 602.8 418 86.4
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.4e-170 601.7 421 79.6
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 5.3e-168 594.7 417 85.9
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.0e-167 592.8 423 83.7
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 5.9e-167 591.3 423 85.1
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.0e-166 590.5 428 83.2
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 8.5e-166 587.4 421 79.8
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.2e-165 585.1 421 86.7
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 5.5e-165 584.7 423 81.6
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.6e-164 582.0 428 79.7
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 6.1e-164 581.3 418 81.1
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.3e-163 579.3 418 81.6
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 5.2e-163 578.2 417 79.4
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.2e-162 577.0 418 78.2
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.5e-162 576.6 417 84.2
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 5.7e-162 574.7 415 77.8
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 7.5e-162 574.3 417 83.9
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 7.5e-162 574.3 421 77.7
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.2e-161 572.8 416 77.9
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.4e-160 570.1 416 74.3
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 4.1e-160 568.5 419 81.4
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 5.4e-160 568.2 420 81.4
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 7.0e-160 567.8 419 76.1
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 9.1e-160 567.4 417 77.5
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.6e-159 566.6 416 79.6
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 3.5e-159 565.5 424 84.7
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 4.5e-159 565.1 417 77.0
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.3e-158 563.5 425 81.4
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-158 563.5 421 78.1
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 6.5e-158 561.2 422 81.8
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.1e-157 560.5 424 77.6
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 1.9e-157 559.7 418 78.7
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 3.2e-157 558.9 422 71.6
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 3.2e-157 558.9 417 83.2
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.2e-157 558.9 421 72.4
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 7.2e-157 557.8 416 83.4
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 9.5e-157 557.4 421 76.5
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 6.1e-156 554.7 418 81.6
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.8e-155 553.1 419 70.4
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 6.8e-155 551.2 430 75.6
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.5e-154 550.1 430 75.3
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.0e-154 549.7 428 75.5
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 2.0e-154 549.7 418 79.2
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 3.1e-152 542.3 425 79.5
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 3.1e-152 542.3 428 75.5
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 9.2e-152 540.8 402 82.6
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 3.5e-151 538.9 421 71.0
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 2.1e-148 529.6 417 79.1
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 6.1e-148 528.1 426 72.1
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.0e-147 527.3 423 72.8
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.8e-147 526.6 414 74.4
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 2.9e-145 519.2 400 78.2
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 5.4e-144 515.0 421 73.6
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.0e-143 513.1 414 68.6
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 7.8e-143 511.1 398 79.4
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 7.3e-141 504.6 416 67.5
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 2.1e-140 503.1 333 78.7
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.8e-140 502.7 333 78.4
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.2e-139 498.4 424 75.5
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 6.8e-139 498.0 424 72.6
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-138 496.5 416 71.4
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 3.4e-138 495.7 429 73.9
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.8e-138 495.0 424 70.0
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 1.7e-137 493.4 420 64.8
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.7e-137 493.4 433 74.4
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 2.2e-137 493.0 420 69.0
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 3.7e-137 492.3 416 71.2
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.7e-137 492.3 423 67.1
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.4e-136 490.3 426 68.8
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.4e-136 488.4 331 77.6
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 5.4e-136 488.4 396 67.9
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.4e-136 488.4 442 69.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 3.5e-135 485.7 333 78.4
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 3.5e-135 485.7 333 78.4
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 3.5e-135 485.7 388 76.0
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.3e-134 483.8 326 77.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 3.0e-134 482.6 419 71.4
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 6.6e-134 481.5 415 67.2
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 9.5e-133 477.6 419 71.1
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 9.8e-130 467.6 426 69.7
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.7e-129 465.7 421 66.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 6.4e-129 464.9 440 61.6
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.1e-127 459.9 438 64.4
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.0e-126 457.6 422 59.0
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 1.0e-126 457.6 416 61.3
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 5.1e-126 455.3 406 68.7
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.1e-125 454.1 421 60.3
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.1e-124 449.9 413 60.5
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 6.2e-124 448.4 413 61.0
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.3e-123 446.4 425 58.8
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 3.8e-121 439.1 422 60.4
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 2.7e-119 433.0 398 60.3
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 9.3e-112 407.9 399 62.2
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 6.0e-111 405.2 451 62.5
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 7.8e-111 404.8 377 59.9
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.9e-109 400.2 377 59.2
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.3e-105 387.5 289 73.7
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.7e-105 387.1 221 86.9
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.3e-102 377.5 416 52.2
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 2.5e-101 373.2 414 56.3
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.4e-99 367.5 320 62.2
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 3.5e-95 352.8 441 57.4
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 2.6e-90 336.7 283 80.9
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.8e-90 335.5 295 64.1
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.9e-85 320.5 272 62.1
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 3.7e-76 289.7 280 58.2
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.4e-75 287.7 160 89.4
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 4.1e-75 286.2 167 85.6
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.2e-74 284.6 352 48.6
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 6.5e-73 278.9 346 48.8
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.2e-68 263.8 240 61.7
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 6.1e-63 245.7 139 88.5
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.6e-58 231.1 158 71.5
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 7.2e-56 222.2 115 93.0
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.1e-51 208.4 162 64.8
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.6e-47 194.5 115 85.2
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 3.6e-47 193.4 159 63.5
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 3.4e-45 186.8 124 75.0
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 7.7e-42 175.6 283 45.6
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 4.7e-39 166.4 156 51.9
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.2e-36 157.5 260 40.8
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 3.1e-35 153.7 413 36.1
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 4.7e-31 139.8 153 61.4
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.8e-29 132.1 64 96.9
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.9e-28 130.6 64 95.3
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.9e-28 130.6 64 95.3
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.4e-27 128.3 64 93.8
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 4.1e-27 126.7 114 59.6
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.1e-24 118.6 165 44.8
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 2.5e-24 117.5 79 73.4
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.2e-23 115.2 97 61.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 6.2e-23 112.8 68 80.9
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 8.9e-22 109.0 68 77.9
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.5e-21 108.2 66 78.8
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 8.3e-20 102.4 141 55.3
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.5e-18 97.1 108 51.9
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 3.0e-17 94.0 157 41.4
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.5e-08 65.1 47 66.0
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.5e-08 65.1 47 66.0
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.2e-07 62.0 40 75.0


User provided reference genes

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