Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43338 Davidia involucrata HOM05D003522 ORTHO05D003993 7.9e-49 196.8 102 100.0
Dinv42765 Davidia involucrata HOM05D003522 ORTHO05D003993 1.2e-25 119.8 92 71.7
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 8.0e-25 117.1 60 96.7
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
CSS0040204 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
CiPaw.07G188400 Carya illinoinensis HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
CiPaw.08G038400 Carya illinoinensis HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
Cc04_g00460 Coffea canephora HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
Hma1.2p1_1104F.1_g257440 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
QL08p040368 Quercus lobata HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
Sabra06G0133600 Salix brachista HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
Zm00001eb338420 Zea mays HOM05D003522 ORTHO05D003993 1.8e-24 115.9 59 98.3
EL10Ac6g15226 Beta vulgaris HOM05D003522 ORTHO05D003993 3.0e-24 115.2 62 93.5
MSTRG.19883 Avicennia marina HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
MSTRG.26107 Avicennia marina HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
CANSAT11G1348 Cannabis sativa HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Cpa.g.sc126.37 Carica papaya HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Ciclev10010045m.g Citrus clementina HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
MELO3C017504.2 Cucumis melo HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
CsaV3_1G031190 Cucumis sativus L. HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Duzib150G0286 Durio zibethinus HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Duzib168G1637 Durio zibethinus HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Migut.D00898 Erythranthe guttata HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Gohir.A08G234900 Gossypium hirsutum HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Gohir.D08G255300 Gossypium hirsutum HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Gorai.004G272400 Gossypium raimondii HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Nitab4.5_0000033g0430 Nicotiana tabacum HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Nitab4.5_0000782g0190 Nicotiana tabacum HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Peaxi162Scf00171g00327 Petunia axillaris HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
QL02p096594 Quercus lobata HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Sed0017254 Sechium edule HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Sed0019676 Sechium edule HOM05D003522 ORTHO05D003993 4.0e-24 114.8 79 77.2
Sc03g0004630 Simmondsia chinensis HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Solyc03g098470.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Sopen03g029210 Solanum pennellii HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
PGSC0003DMG400010156 Solanum tuberosum HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
PGSC0003DMG400025548 Solanum tuberosum HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Thecc.06G016400 Theobroma cacao HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
Thecc.09G164300 Theobroma cacao HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
TWI60G1574 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
TWI63G0474 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
unitig_92.g28119 Utricularia gibba HOM05D003522 ORTHO05D003993 4.0e-24 114.8 59 96.6
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 96.6
arahy.Tifrunner.gnm1.ann1.341EN6 Arachis hypogaea HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
arahy.Tifrunner.gnm1.ann1.QJ4IDW Arachis hypogaea HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Ca_06194_v3 Cicer arietinum L. HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Glyma.04G208600 Glycine max HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Glyma.06G157100 Glycine max HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Glyma.13G093400 Glycine max HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Glyma.17G067100 Glycine max HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Lj4g0002134 Lotus japonicus HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Lj5g0004975 Lotus japonicus HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Lalb_Chr07g0180191 Lupinus albus HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Lalb_Chr12g0199151 Lupinus albus HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Lalb_Chr13g0300421 Lupinus albus HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Medtr2g104440 Medicago truncatula HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Medtr5g072530 Medicago truncatula HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
Phvul.003G149400 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 5.2e-24 114.4 59 94.9
TWI15G0209 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 6.8e-24 114.0 59 94.9
Actinidia21860 Actinidia chinensis HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
CDE01G0803 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
CDE12G0561 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
FvH4_7g02280 Fragaria vesca HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
FAN01G2196 Fragaria x ananassa HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
FAN06G0337 Fragaria x ananassa HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
FAN10G2139 Fragaria x ananassa HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
FAN17G0034 Fragaria x ananassa HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
FAN22G0545 Fragaria x ananassa HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
Mapoly0127s0039 Marchantia polymorpha HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
RcHm_v2.0_Chr1g0319581 Rosa chinensis HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
RcHm_v2.0_Chr4g0403921 Rosa chinensis HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
TAR383G1055 Trochodendron aralioides HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
unitig_37.g12145 Utricularia gibba HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
GSVIVG01008301001 Vitis vinifera HOM05D003522 ORTHO05D003993 8.9e-24 113.6 59 94.9
CAN.G929.30 Capsicum annuum HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 94.9
Dinv37803 Davidia involucrata HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 94.9
Eucgr.L02749 Eucalyptus grandis HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 94.9
Hma1.2p1_1261F.1_g271100 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 94.9
Os02g0126700 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 94.9
Phvul.009G153200 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 93.2
Prupe.1G094500 Prunus persica HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 94.9
Prupe.4G278600 Prunus persica HOM05D003522 ORTHO05D003993 1.2e-23 113.2 59 94.9
Oeu004017.1 Olea europaea HOM05D003522 ORTHO05D003993 1.5e-23 112.8 59 94.9
Psat6g015920 Pisum sativum HOM05D003522 ORTHO05D003993 1.5e-23 112.8 58 94.8
THA.LOC104803508 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 1.5e-23 112.8 59 94.9
Atru.chr12.835 Acer truncatum HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 93.2
Manes.05G188200 Manihot esculenta HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 94.9
Manes.06G037450 Manihot esculenta HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 94.9
Nitab4.5_0001678g0020 Nicotiana tabacum HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 94.9
Peaxi162Scf00643g00641 Petunia axillaris HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 94.9
PGR044G2568 Punica granatum HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 93.2
Solyc06g072280.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 94.9
Sopen06g028650 Solanum pennellii HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 94.9
PGSC0003DMG400027050 Solanum tuberosum HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 94.9
TAR636G2407 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 93.2
HPP92_018528 Vanilla planifolia HOM05D003522 ORTHO05D003993 2.0e-23 112.5 59 93.2
Migut.J01787 Erythranthe guttata HOM05D003522 ORTHO05D003993 2.6e-23 112.1 59 93.2
SalBow6G5940 Salvia bowleyana HOM05D000567 ORTHO05D003993 2.6e-23 112.1 59 93.2
TAR626G0766 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.6e-23 112.1 59 93.2
PSO170G2534 Papaver somniferum HOM05D003522 ORTHO05D003993 3.4e-23 111.7 59 91.5
PSO782G3457 Papaver somniferum HOM05D003522 ORTHO05D003993 3.4e-23 111.7 59 91.5
Psat6g014800 Pisum sativum HOM05D003522 ORTHO05D003993 3.4e-23 111.7 58 93.1
THA.LOC104803931 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 3.4e-23 111.7 59 93.2
ATR0763G200 Amborella trichopoda HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 91.5
AL3G53200 Arabidopsis lyrata HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
AT2G18740 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
AT4G30330 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
BcaB03g16666 Brassica carinata HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
BcaB08g34822 Brassica carinata HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
BcaC06g36458 Brassica carinata HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
A06p33110 Brassica napus HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
C03p59350 Brassica napus HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
BolC3t18199H Brassica oleracea HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
BolC7t40790H Brassica oleracea HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
BraA06t26241Z Brassica rapa HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 4.4e-23 111.3 59 93.2
CSS0025026 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
Carub.0003s3301 Capsella rubella HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
Carub.0007s1027 Capsella rubella HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
Thhalv10022941m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
Thhalv10026682m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
MD13G1262900 Malus domestica HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
Nn2g14329 Nelumbo nucifera HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 91.5
Sp3g32240 Schrenkiella parvula HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
Sp7g28200 Schrenkiella parvula HOM05D003522 ORTHO05D003993 4.4e-23 111.3 59 93.2
MBI14_g26429_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 7.5e-23 110.5 59 89.8
Nitab4.5_0005074g0050 Nicotiana tabacum HOM05D003522 ORTHO05D003993 7.5e-23 110.5 59 91.5
Aa31LG8G15860 Aethionema arabicum HOM05D003522 ORTHO05D003993 9.8e-23 110.2 59 91.5
CARHR109330 Cardamine hirsuta HOM05D003522 ORTHO05D003993 2.2e-22 109.0 59 89.8
PSO063G7604 Papaver somniferum HOM05D003522 ORTHO05D003993 2.2e-22 109.0 59 89.8
HanXRQChr10g0311551 Helianthus annuus HOM05D003522 ORTHO05D003993 2.8e-22 108.6 57 93.0
Lsat_1_v5_gn_5_137520 Lactuca sativa HOM05D003522 ORTHO05D003993 2.8e-22 108.6 57 93.0
PSO782G1667 Papaver somniferum HOM05D003522 ORTHO05D003993 2.8e-22 108.6 59 89.8
Pp3c17_6070 Physcomitrium patens HOM05D003522 ORTHO05D003993 4.9e-22 107.8 57 91.2
Pp3c14_15210 Physcomitrium patens HOM05D003522 ORTHO05D003993 6.3e-22 107.5 57 91.2
Pp3c2_10270 Physcomitrium patens HOM05D003522 ORTHO05D003993 6.3e-22 107.5 57 91.2
ECA234G0975 Erigeron canadensis HOM05D003522 ORTHO05D003993 1.1e-21 106.7 57 91.2
SMO347G0208 Selaginella moellendorffii HOM05D003522 ORTHO05D003993 1.1e-21 106.7 59 88.1
Psat6g005000 Pisum sativum HOM05D003522 ORTHO05D003993 3.5e-20 101.7 55 90.9
Cre08.g385200 Chlamydomonas reinhardtii HOM05D003522 ORTHO05D003993 1.0e-19 100.1 57 80.7
DCAR_014711 Daucus carota HOM05D003522 ORTHO05D003993 1.0e-19 100.1 66 81.8
SHI02961 Sapria himalayana HOM05D003522 ORTHO05D003993 1.3e-19 99.8 87 65.5
MCO12G107 Micromonas commoda HOM05D003522 ORTHO05D003993 1.7e-19 99.4 57 84.2
Prupe.1G136300 Prunus persica HOM05D003522 ORTHO05D003993 2.9e-19 98.6 59 83.1
MBI16_g00671_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 6.6e-19 97.4 50 92.0
PRCOL_00004725 Prasinoderma coloniale HOM05D003522 ORTHO05D003993 1.5e-18 96.3 59 78.0
Eucgr.J03147 Eucalyptus grandis HOM05D003522 ORTHO05D003993 4.7e-17 91.3 105 53.3
ClCG06G013040 Citrullus lanatus HOM05D003522 ORTHO05D003993 8.0e-17 90.5 59 81.4
ClCG09G010690 Citrullus lanatus HOM05D003522 ORTHO05D003993 8.0e-17 90.5 59 81.4
MELO3C013179.2 Cucumis melo HOM05D003522 ORTHO05D003993 8.0e-17 90.5 59 81.4
Nitab4.5_0004612g0030 Nicotiana tabacum HOM05D003522 ORTHO05D003993 8.0e-17 90.5 59 81.4
Hund03511 Selenicereus undatus HOM05D003522 ORTHO05D003993 8.0e-17 90.5 59 81.4
Hund19625 Selenicereus undatus HOM05D003522 ORTHO05D003993 8.0e-17 90.5 59 81.4
Zm00001eb120030 Zea mays HOM05D003522 ORTHO05D003993 8.0e-17 90.5 45 97.8
arahy.Tifrunner.gnm1.ann1.Z89DQ4 Arachis hypogaea HOM05D003522 ORTHO05D003993 1.0e-16 90.1 59 79.7
CsaV3_7G021700 Cucumis sativus L. HOM05D003522 ORTHO05D003993 1.8e-16 89.4 45 95.6
AUR62003643 Chenopodium quinoa HOM05D003522 ORTHO05D003993 3.0e-16 88.6 59 79.7
AUR62017953 Chenopodium quinoa HOM05D003522 ORTHO05D003993 3.0e-16 88.6 59 79.7
BcaC04g22886 Brassica carinata HOM05D003522 ORTHO05D003993 8.9e-16 87.0 59 78.0
CSS0040441 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 8.9e-16 87.0 59 78.0
Lsat_1_v5_gn_1_39580 Lactuca sativa HOM05D003522 ORTHO05D003993 8.9e-16 87.0 57 80.7
Psat6g004960 Pisum sativum HOM05D003522 ORTHO05D003993 2.6e-15 85.5 44 95.5
ATR0580G403 Amborella trichopoda HOM05D003522 ORTHO05D003993 7.5e-15 84.0 46 89.1
vmacro18702 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 1.3e-14 83.2 53 83.0
Sabra18G0083100 Salix brachista HOM05D003522 ORTHO05D003993 1.7e-14 82.8 44 93.2
Zm00001eb410720 Zea mays HOM05D003522 ORTHO05D003993 1.7e-14 82.8 44 95.5
AUR62038785 Chenopodium quinoa HOM05D003522 ORTHO05D003993 1.8e-13 79.3 55 76.4
arahy.Tifrunner.gnm1.ann1.G8BNVQ Arachis hypogaea HOM05D003522 ORTHO05D003993 9.2e-13 77.0 59 71.2
Rhsim12G0214100 Rhododendron simsii HOM05D003522 ORTHO05D003993 6.0e-12 74.3 36 97.2
TPR.G34745 Trifolium pratense HOM05D003522 ORTHO05D003993 1.3e-11 73.2 36 94.4
Aa31LG2G20200 Aethionema arabicum HOM05D001097 ORTHO05D001009 2.3e-11 72.4 51 68.6
FAN12G1866 Fragaria x ananassa HOM05D003522 ORTHO05D003993 3.9e-11 71.6 64 65.6
Psat6g139240 Pisum sativum HOM05D003522 ORTHO05D003993 3.9e-11 71.6 36 91.7
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 5.0e-11 71.2 51 70.6
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 5.0e-11 71.2 51 70.6
Os08g0151400 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 5.0e-11 71.2 35 94.3
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 4.3e-10 68.2 36 88.9
C09p14220 Brassica napus HOM05D000306 ORTHO05D000410 7.3e-10 67.4 98 48.0
vmacro08527 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 2.1e-09 65.9 43 72.1
Manes.08G085100 Manihot esculenta HOM05D003522 ORTHO05D003993 3.6e-09 65.1 33 97.0
ECA246G2650 Erigeron canadensis HOM05D002081 ORTHO05D002088 1.8e-08 62.8 39 74.4
Haze_15038 Corylus avellana HOM05D001148 ORTHO05D000960 3.1e-08 62.0 30 100.0
BolC9t54322H Brassica oleracea HOM05D003522 ORTHO05D003993 5.2e-08 61.2 59 59.3


User provided reference genes

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