Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 3.2e-179 631.7 337 100.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.4e-147 526.6 336 81.0
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 7.7e-133 477.6 338 73.7
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.0e-132 477.2 338 74.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 8.0e-130 467.6 335 73.4
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.4e-126 456.8 339 72.0
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.0e-125 453.0 337 71.2
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.4e-118 428.3 338 67.8
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.5e-115 420.2 336 65.8
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 2.3e-113 412.9 352 63.4
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.5e-112 410.2 339 66.1
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.4e-112 409.1 336 62.8
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 4.4e-112 408.7 337 63.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 6.4e-111 404.8 340 63.5
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.4e-110 402.9 338 63.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 9.2e-110 401.0 338 61.8
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.2e-109 400.6 319 66.1
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.0e-109 399.8 338 62.4
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 5.9e-109 398.3 339 62.5
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.0e-108 397.5 338 63.3
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.3e-108 397.1 338 61.2
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 2.3e-108 396.4 338 63.3
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.9e-108 396.0 338 61.8
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 3.9e-108 395.6 332 63.6
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 8.6e-108 394.4 338 62.7
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.1e-107 394.0 336 63.1
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.9e-107 393.3 338 62.7
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.2e-106 390.6 338 60.7
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.1e-106 389.8 336 61.0
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.1e-106 389.8 336 60.1
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.6e-106 389.0 338 60.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 6.2e-106 388.3 340 65.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 8.0e-106 387.9 340 60.3
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.8e-105 386.7 337 60.5
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.8e-105 386.7 319 64.9
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.0e-105 385.6 335 61.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 6.8e-105 384.8 335 62.7
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 7.5e-104 381.3 338 59.8
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 7.5e-104 381.3 337 62.6
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 9.8e-104 380.9 336 59.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 9.8e-104 380.9 336 58.3
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.9e-103 379.4 338 60.1
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 4.9e-103 378.6 337 62.0
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 6.4e-103 378.3 339 62.5
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.3e-103 377.9 338 59.8
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.1e-102 377.5 338 59.8
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-102 376.7 338 59.5
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.4e-102 376.3 340 62.4
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.2e-102 375.9 338 59.2
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.1e-102 375.6 338 59.5
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.4e-102 375.2 338 59.5
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 7.0e-102 374.8 334 57.8
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.0e-101 373.2 325 60.9
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 4.6e-101 372.1 336 62.5
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.3e-100 370.5 279 71.0
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 8.6e-100 367.9 337 61.7
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 8.6e-100 367.9 337 59.3
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 8.6e-100 367.9 338 58.6
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.9e-99 366.7 337 58.8
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 3.3e-99 365.9 337 59.6
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.3e-99 365.5 337 60.2
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 5.6e-99 365.2 338 57.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 9.5e-99 364.4 279 68.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.5e-99 364.4 336 61.0
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.8e-98 362.8 337 61.4
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 4.7e-98 362.1 339 60.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 2.3e-97 359.8 336 55.4
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.1e-97 359.4 278 66.2
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 5.2e-97 358.6 339 57.2
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 5.2e-97 358.6 331 58.9
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 6.8e-97 358.2 336 54.5
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 6.8e-97 358.2 280 66.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 3.4e-96 355.9 337 57.3
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.4e-96 355.9 334 58.7
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.8e-96 354.4 327 61.5
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 9.8e-96 354.4 347 54.5
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-95 354.0 339 56.3
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.7e-95 353.6 336 59.5
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.2e-95 353.2 339 56.6
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 4.9e-95 352.1 337 56.4
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 8.3e-95 351.3 221 76.5
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 9.2e-94 347.8 252 70.2
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.3e-92 344.0 260 67.7
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.9e-92 342.4 340 56.8
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 8.6e-92 341.3 245 69.0
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 8.6e-92 341.3 332 59.0
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.1e-91 340.9 337 57.0
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.1e-91 340.9 341 55.4
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 5.6e-91 338.6 337 55.8
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 7.3e-91 338.2 336 53.6
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.6e-90 337.0 327 56.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 8.1e-90 334.7 350 55.1
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.1e-89 334.3 340 53.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.4e-89 334.0 245 65.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 3.1e-89 332.8 337 54.3
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 3.1e-89 332.8 235 71.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.4e-88 328.9 278 61.2
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.4e-88 328.9 278 61.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 9.9e-88 327.8 277 60.6
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 9.9e-88 327.8 277 60.6
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.2e-87 326.6 277 59.6
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 4.1e-86 322.4 239 65.7
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 7.1e-86 321.6 278 59.4
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 7.1e-86 321.6 245 64.5
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-85 320.5 240 65.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.6e-85 320.5 239 64.9
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.3e-84 316.6 256 61.3
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 3.9e-84 315.8 260 61.5
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 8.6e-84 314.7 256 60.9
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 8.6e-84 314.7 256 60.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 4.3e-83 312.4 240 63.8
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.4e-81 306.6 217 68.7
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.9e-79 299.7 337 50.1
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.1e-78 297.7 199 69.3
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.1e-78 297.7 277 57.4
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.4e-78 296.6 254 60.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 4.0e-73 279.3 283 53.4
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 3.0e-68 263.1 263 52.5
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 8.7e-68 261.5 222 56.3
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 4.2e-62 242.7 250 56.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 5.1e-60 235.7 224 52.7
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-59 234.6 146 71.2
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.6e-56 223.4 254 51.2
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 3.4e-56 223.0 221 50.7
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 6.0e-53 212.2 277 43.3
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 7.4e-51 205.3 248 44.8
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 4.8e-50 202.6 183 54.6
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 5.3e-49 199.1 212 54.7
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.9e-46 190.7 202 49.0
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 9.1e-33 145.2 264 40.2
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.7e-29 133.7 195 46.2
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.4e-28 131.3 183 43.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 2.3e-28 130.6 116 57.8
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 2.6e-27 127.1 188 38.8
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.6e-27 127.1 177 47.5
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 7.2e-22 109.0 82 63.4
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 7.0e-17 92.4 252 33.3
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-09 68.6 70 51.4
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 3.1e-09 67.0 49 65.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 2.7e-08 63.9 40 70.0
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 4.5e-08 63.2 101 43.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-06 58.5 150 33.3
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-06 57.4 150 32.7


User provided reference genes

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