Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.0e-141 505.8 254 100.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 6.5e-116 421.0 253 85.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.3e-105 386.0 240 79.6
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.8e-102 376.3 244 77.9
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.4e-102 375.9 248 76.6
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 3.8e-100 368.6 243 77.0
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.5e-93 346.7 251 73.7
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.5e-91 339.3 254 66.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.7e-90 335.1 251 70.9
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 3.0e-89 332.4 229 74.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 6.7e-89 331.3 239 67.4
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.5e-88 330.1 248 67.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 3.3e-88 328.9 254 66.5
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 4.4e-88 328.6 256 66.4
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 5.7e-88 328.2 249 65.5
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 7.4e-88 327.8 256 66.0
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 9.7e-88 327.4 245 66.9
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.3e-87 327.0 261 67.8
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 3.7e-87 325.5 238 70.2
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 4.8e-87 325.1 238 66.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.8e-86 323.2 242 71.5
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.8e-86 323.2 245 68.6
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.4e-86 322.8 238 66.0
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 2.4e-86 322.8 238 66.0
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.2e-85 320.5 242 70.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 4.5e-85 318.5 256 64.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.3e-84 317.0 259 64.9
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.9e-84 315.8 245 66.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.9e-84 315.8 247 65.6
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.9e-84 315.8 251 64.5
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-83 313.2 244 67.6
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.5e-83 312.8 244 65.2
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.2e-83 312.4 259 65.3
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.2e-83 312.0 243 67.1
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-82 310.5 246 67.1
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-82 310.5 244 67.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.6e-82 310.1 250 66.4
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 2.1e-82 309.7 245 65.3
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.7e-82 309.3 254 64.6
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 6.1e-82 308.1 244 67.2
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 8.0e-82 307.8 253 64.8
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.8e-81 306.6 252 62.7
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.8e-81 306.6 244 62.3
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 3.0e-81 305.8 258 63.6
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 4.0e-81 305.4 252 62.3
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 5.2e-81 305.1 240 68.3
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 5.2e-81 305.1 244 63.9
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 6.7e-81 304.7 256 64.1
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 8.8e-81 304.3 251 61.8
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.1e-80 303.9 249 63.1
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.5e-80 303.5 248 64.9
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-80 303.1 244 66.4
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.0e-80 303.1 249 66.3
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.0e-80 303.1 252 61.5
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 3.3e-80 302.4 247 65.2
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 4.4e-80 302.0 252 61.1
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.3e-79 300.4 215 70.2
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.7e-79 300.1 238 65.1
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 2.8e-79 299.3 249 65.1
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.8e-79 299.3 243 64.6
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.3e-79 298.1 248 63.3
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 8.2e-79 297.7 241 63.9
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.4e-78 297.0 248 64.1
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.1e-78 295.8 215 70.2
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 4.1e-78 295.4 248 61.7
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.3e-78 295.0 223 66.8
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 7.0e-78 294.7 246 63.4
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 7.0e-78 294.7 249 61.4
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 9.1e-78 294.3 215 68.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 9.1e-78 294.3 252 60.3
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.7e-77 292.7 252 59.9
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.5e-77 292.4 249 61.4
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.5e-77 292.0 249 61.0
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.7e-76 290.0 233 63.5
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.2e-76 289.7 251 59.8
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.5e-76 288.1 241 61.4
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 6.5e-76 288.1 246 63.8
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 8.5e-76 287.7 241 61.8
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.5e-75 286.2 241 61.4
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.5e-75 285.0 215 66.0
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.1e-74 283.1 240 62.1
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 3.6e-74 282.3 239 59.4
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 8.0e-74 281.2 241 61.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.8e-73 280.0 248 58.1
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.8e-73 280.0 258 57.4
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.8e-73 280.0 215 65.6
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.8e-73 280.0 215 65.6
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.2e-72 277.3 236 61.4
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.5e-72 276.9 240 60.0
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.5e-72 276.9 240 60.0
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 7.5e-72 274.6 242 61.2
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.3e-71 273.9 239 60.7
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.8e-71 272.7 257 60.7
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 3.7e-71 272.3 239 58.6
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 6.3e-71 271.6 239 60.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 6.3e-71 271.6 241 60.6
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 8.3e-71 271.2 238 58.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 8.3e-71 271.2 238 58.8
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-70 270.8 238 58.8
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.1e-70 270.8 242 60.7
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.8e-70 270.0 243 58.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.3e-68 263.8 215 62.3
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 6.5e-68 261.5 240 58.3
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 4.2e-67 258.8 238 56.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 5.5e-67 258.5 236 57.2
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.2e-66 257.3 273 51.6
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-66 256.9 238 56.3
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.4e-65 253.8 268 52.6
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.3e-63 247.3 208 61.1
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-61 240.0 201 61.2
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-59 233.4 184 66.3
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-59 233.4 184 66.3
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.8e-57 226.9 174 64.9
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 4.0e-57 225.7 243 52.3
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 5.7e-56 221.9 254 46.9
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 6.4e-55 218.4 250 51.6
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-54 217.2 173 63.6
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 4.3e-51 205.7 184 54.9
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 4.7e-50 202.2 219 52.1
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 6.8e-49 198.4 234 48.7
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.0e-48 196.8 210 51.0
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 4.4e-48 195.7 210 51.0
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.9e-47 193.0 140 66.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.4e-46 189.9 152 63.2
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.2e-46 189.5 210 50.0
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 9.2e-46 188.0 141 67.4
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-41 174.5 147 61.9
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.6e-40 169.9 249 44.6
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 2.2e-39 166.8 236 44.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 3.2e-38 162.9 183 48.6
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 7.1e-38 161.8 244 41.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.6e-35 152.1 171 48.0
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 2.9e-31 139.8 94 69.1
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 6.4e-31 138.7 155 50.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.0e-28 129.8 166 41.6
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 4.4e-24 115.9 141 43.3
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.2e-23 113.6 98 60.2
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 4.2e-22 109.4 60 83.3
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 7.8e-21 105.1 138 43.5
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.3e-20 104.4 250 36.8
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.9e-19 100.5 142 37.3


User provided reference genes

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