Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 3354.7 1731 100.0
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2805.8 1714 84.0
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2588.9 1733 77.3
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2570.8 1747 76.5
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2551.9 1715 77.8
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2547.3 1800 73.6
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2504.2 1715 75.8
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2485.3 1744 74.9
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2473.7 1737 74.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2446.0 1734 73.4
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2440.2 1741 74.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2439.1 1721 72.9
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2436.8 1741 72.4
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2435.6 1731 73.0
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2433.3 1742 72.0
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2428.3 1723 72.7
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2427.1 1741 73.4
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2419.8 1751 72.5
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2404.8 1629 76.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2387.5 1731 71.8
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2385.1 1803 69.9
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2378.6 1718 71.3
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2377.8 1737 72.0
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2375.5 1730 71.4
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2373.2 1730 71.6
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2364.3 1743 71.5
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2351.2 1716 70.8
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2348.2 1711 70.8
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2347.8 1717 69.9
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2345.5 1736 70.1
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2344.3 1715 69.7
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2337.0 1745 71.1
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2334.7 1714 69.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2333.5 1745 71.4
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2330.8 1731 70.5
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2327.7 1727 69.8
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2321.6 1745 71.2
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2318.9 1746 71.0
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2312.7 1741 69.8
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2310.8 1437 82.7
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2307.3 1722 69.0
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2293.1 1776 68.4
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2290.8 1731 68.9
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2289.2 1738 68.4
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2283.8 1780 67.3
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2280.0 1736 68.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2275.4 1753 67.7
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2260.7 1745 70.0
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2260.7 1731 67.6
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2256.9 1737 68.7
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2252.6 1638 71.1
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2236.1 1718 67.2
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2221.8 1787 66.4
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2215.3 1642 70.3
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2214.9 1623 70.9
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2213.0 1761 66.4
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2211.4 1638 70.3
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2207.6 1785 64.6
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2207.2 1714 67.2
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2201.4 1714 67.1
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2196.4 1780 64.0
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2196.4 1739 66.6
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2188.3 1623 69.6
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2182.9 1743 66.3
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2172.5 1779 63.6
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2167.9 1779 63.4
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2164.8 1788 62.9
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2160.2 1801 64.6
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2147.9 1783 62.8
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2147.5 1770 63.2
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2147.5 1770 63.2
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 2136.7 1480 75.3
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2130.1 1768 62.4
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2129.8 1675 67.1
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2124.4 1768 63.2
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2124.4 1768 63.2
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2122.8 1785 61.8
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2110.1 1788 61.7
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2110.1 1777 62.1
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 2102.8 1389 79.0
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 2098.2 1799 61.6
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2092.8 1746 65.3
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 2081.2 1556 70.0
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 2075.4 1517 71.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 2017.3 1782 61.7
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2015.4 1622 66.2
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 2000.7 1424 73.0
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1962.2 1790 60.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1931.8 1689 60.7
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1774.2 1276 72.5
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1746.5 1468 62.1
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1718.7 1729 54.7
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1671.4 1583 56.9
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1628.2 1370 63.1
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1446.4 1219 64.5
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1435.6 1790 46.0
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1387.9 1742 46.2
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1373.2 998 70.0
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1365.1 914 78.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1358.6 1727 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1338.6 1714 44.7
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1127.1 1079 54.8
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.9e-308 1062.8 807 68.8
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.4e-301 1039.3 908 61.1
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.4e-286 989.9 1458 40.6
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 7.6e-285 984.9 883 60.9
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 4.5e-277 959.1 669 72.9
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.8e-270 937.2 644 71.4
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-229 801.6 894 49.6
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.8e-197 692.6 738 50.1
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 5.3e-193 679.9 504 70.2
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 5.5e-174 616.7 435 71.7
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.5e-171 608.6 460 75.2
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 7.6e-168 596.3 487 66.7
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.4e-145 522.3 560 54.3
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.7e-144 516.5 511 54.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 4.2e-142 510.8 410 65.9
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 7.2e-142 510.0 419 65.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 4.4e-139 500.7 430 67.7
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 3.2e-126 458.0 416 61.3
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 8.3e-122 443.4 299 80.3
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 2.1e-109 402.1 429 54.1
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.3e-102 377.1 367 55.0
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 2.8e-101 375.2 295 67.1
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.9e-97 362.5 282 64.9
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-96 359.8 325 57.8
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 7.6e-91 340.5 371 55.0
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.2e-81 308.5 282 57.4
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 9.0e-76 290.4 1559 23.4
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.2e-75 290.0 221 64.7
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 4.5e-59 235.0 164 68.9
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.4e-52 213.4 183 61.2
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.2e-45 189.5 404 32.9
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 6.3e-45 188.0 120 73.3
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.3e-39 169.5 178 53.4
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 2.2e-37 162.9 117 65.8
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 3.1e-36 159.1 197 47.2
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 5.5e-33 148.3 117 60.7
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.8e-31 143.3 98 71.4
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.3e-30 139.0 383 31.3
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 5.7e-30 138.3 139 67.6
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 7.4e-30 137.9 78 85.9
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 1.4e-28 133.7 70 95.7
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 2.4e-28 132.9 96 68.8
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 9.1e-28 131.0 102 67.6
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 1.6e-27 130.2 97 67.0
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 2.5e-25 122.9 112 59.8
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.6e-24 119.0 78 73.1
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 6.1e-24 118.2 82 70.7
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 8.0e-24 117.9 78 67.9
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.4e-23 117.1 76 75.0
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 8.8e-23 114.4 76 75.0
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 5.7e-22 111.7 92 66.3
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 2.8e-21 109.4 176 39.2
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 4.8e-21 108.6 95 60.0
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 6.3e-21 108.2 107 52.3
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 8.2e-21 107.8 110 56.4
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 3.5e-19 102.4 86 61.6
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 9.4e-17 94.4 48 93.8
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.2e-16 94.0 59 78.0
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.7e-16 92.8 48 91.7
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 4.7e-16 92.0 255 29.0
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.0e-15 90.9 61 70.5
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.4e-12 80.5 154 27.9
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 4.1e-12 79.0 73 56.2
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 9.1e-12 77.8 61 60.7
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.0e-11 76.6 65 56.9
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.0e-11 76.6 65 56.9
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 2.7e-11 76.3 53 73.6
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 7.7e-11 74.7 65 55.4
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 2.9e-10 72.8 93 44.1
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 2.5e-09 69.7 75 50.7
MBI13_g37902_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.8e-07 61.6 40 65.0
Medtr1g068930 Medicago truncatula HOM05D001217 ORTHO05D001097 8.8e-07 61.2 64 43.8
Psat6g068080 Pisum sativum HOM05D001217 ORTHO05D001097 8.8e-07 61.2 64 43.8
Ca_09613_v3 Cicer arietinum L. HOM05D001217 ORTHO05D001097 1.2e-06 60.8 64 42.2
TPR.G34714 Trifolium pratense HOM05D001217 ORTHO05D001097 2.0e-06 60.1 64 42.2


User provided reference genes

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