Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29997 Davidia involucrata HOM05D004344 ORTHO05D006026 8.7e-255 883.2 482 100.0
Dinv26836 Davidia involucrata HOM05D004344 ORTHO05D006026 1.6e-184 649.8 425 86.1
CSS0049451 Camellia sinensis var. sinensis HOM05D004344 ORTHO05D006026 2.4e-167 592.8 473 72.9
Hma1.2p1_0017F.1_g011490 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 1.7e-165 586.6 480 70.4
TAR376G0722 Trochodendron aralioides HOM05D004344 ORTHO05D006026 8.1e-160 567.8 472 70.1
Lj7C70T9 Lonicera japonica HOM05D004344 ORTHO05D006026 1.9e-153 546.6 474 67.1
GSVIVG01022113001 Vitis vinifera HOM05D004344 ORTHO05D006026 2.4e-151 539.7 473 66.8
vmacro05947 Vaccinium macrocarpon HOM05D004344 ORTHO05D006026 1.1e-148 530.8 479 66.6
Haze_15381 Corylus avellana HOM05D004344 ORTHO05D006026 3.4e-142 509.2 485 65.8
CANSAT01G0155 Cannabis sativa HOM05D004344 ORTHO05D006026 3.3e-137 492.7 490 63.7
Rhsim10G0115900 Rhododendron simsii HOM05D004344 ORTHO05D006026 2.0e-134 483.4 485 62.5
CiPaw.01G016700 Carya illinoinensis HOM05D004344 ORTHO05D006026 3.4e-134 482.6 489 62.8
QL06p040994 Quercus lobata HOM05D004344 ORTHO05D006026 7.6e-134 481.5 495 62.6
Prupe.7G131600 Prunus persica HOM05D004344 ORTHO05D006026 4.2e-132 475.7 483 60.5
DCAR_025744 Daucus carota HOM05D004344 ORTHO05D006026 2.7e-131 473.0 475 61.5
Manes.13G122900 Manihot esculenta HOM05D004344 ORTHO05D006026 2.7e-131 473.0 481 61.5
MELO3C020860.2 Cucumis melo HOM05D004344 ORTHO05D006026 1.3e-130 470.7 485 59.4
Sed0002898 Sechium edule HOM05D004344 ORTHO05D006026 3.9e-130 469.2 481 59.5
CsaV3_2G016500 Cucumis sativus L. HOM05D004344 ORTHO05D006026 3.3e-129 466.1 484 59.3
Nitab4.5_0002029g0030 Nicotiana tabacum HOM05D004344 ORTHO05D006026 3.3e-129 466.1 478 57.1
Cc07_g06110 Coffea canephora HOM05D004344 ORTHO05D006026 4.3e-129 465.7 486 61.7
ClCG02G012370 Citrullus lanatus HOM05D004344 ORTHO05D006026 2.8e-128 463.0 485 58.4
Oeu023198.1 Olea europaea HOM05D004344 ORTHO05D006026 3.4e-126 456.1 521 54.5
TWI09G1157 Tripterygium wilfordii HOM05D004344 ORTHO05D006026 7.2e-124 448.4 481 59.3
Nitab4.5_0003519g0040 Nicotiana tabacum HOM05D004344 ORTHO05D006026 9.4e-124 448.0 478 55.4
FAN26G0646 Fragaria x ananassa HOM05D004344 ORTHO05D006026 1.0e-122 444.5 481 54.7
FvH4_1g22730 Fragaria vesca HOM05D004344 ORTHO05D006026 5.7e-121 438.7 483 56.3
MD15G1285400 Malus domestica HOM05D004344 ORTHO05D006026 5.7e-121 438.7 481 58.2
PGR102G1820 Punica granatum HOM05D004344 ORTHO05D006026 2.2e-120 436.8 477 59.5
FAN19G2019 Fragaria x ananassa HOM05D004344 ORTHO05D006026 2.8e-120 436.4 486 56.0
FAN23G1634 Fragaria x ananassa HOM05D004344 ORTHO05D006026 3.7e-120 436.0 483 56.1
CAN.G370.49 Capsicum annuum HOM05D004344 ORTHO05D006026 9.1e-119 431.4 456 59.6
Sopen02g037860 Solanum pennellii HOM05D004344 ORTHO05D006026 3.4e-118 429.5 491 56.0
Solyc02g093300.3 Solanum lycopersicum HOM05D004344 ORTHO05D006026 4.5e-118 429.1 491 56.4
Potri.007G045300 Populus trichocarpa HOM05D004344 ORTHO05D006026 1.7e-117 427.2 493 56.4
Cpa.g.sc55.134 Carica papaya HOM05D004344 ORTHO05D006026 3.8e-117 426.0 491 52.7
Sabra07G0040300 Salix brachista HOM05D004344 ORTHO05D006026 6.5e-117 425.2 491 55.4
Actinidia12045 Actinidia chinensis HOM05D004344 ORTHO05D006026 7.2e-116 421.8 473 60.0
Peaxi162Scf00450g00127 Petunia axillaris HOM05D004344 ORTHO05D006026 9.4e-116 421.4 482 55.4
Ciclev10024699m.g Citrus clementina HOM05D004344 ORTHO05D006026 6.1e-115 418.7 482 52.7
Atru.chr3.306 Acer truncatum HOM05D004344 ORTHO05D006026 7.9e-115 418.3 489 55.4
Sc03g0001670 Simmondsia chinensis HOM05D004344 ORTHO05D006026 7.4e-113 411.8 486 53.5
MSTRG.23740 Avicennia marina HOM05D004344 ORTHO05D006026 1.4e-111 407.5 522 50.4
Hund16343 Selenicereus undatus HOM05D004344 ORTHO05D006026 1.0e-109 401.4 483 51.3
Oeu020531.3 Olea europaea HOM05D004344 ORTHO05D006026 1.7e-109 400.6 523 49.9
Eucgr.H01686 Eucalyptus grandis HOM05D004344 ORTHO05D006026 1.6e-107 394.0 487 52.4
Phvul.002G017900 Phaseolus vulgaris HOM05D004344 ORTHO05D006026 2.1e-107 393.7 483 50.5
Lalb_Chr09g0323231 Lupinus albus HOM05D004344 ORTHO05D006026 1.8e-106 390.6 486 50.4
PSO541G2052 Papaver somniferum HOM05D004344 ORTHO05D006026 5.2e-106 389.0 471 52.4
PSO675G1845 Papaver somniferum HOM05D004344 ORTHO05D006026 4.4e-105 386.0 477 52.2
Ca_24759_v3 Cicer arietinum L. HOM05D004344 ORTHO05D006026 1.3e-104 384.4 481 55.5
Lsat_1_v5_gn_2_84960 Lactuca sativa HOM05D004344 ORTHO05D006026 1.7e-104 384.0 465 52.0
SGA_v2.0_scaffold15G07321 Striga asiatica HOM05D004344 ORTHO05D006026 2.2e-104 383.6 531 49.7
Lj3g0019632 Lotus japonicus HOM05D004344 ORTHO05D006026 2.8e-104 383.3 480 51.7
Glyma.01G187400 Glycine max HOM05D004344 ORTHO05D006026 6.3e-104 382.1 483 50.5
TPR.G26904 Trifolium pratense HOM05D004344 ORTHO05D006026 1.0e-101 374.8 482 49.6
Ah.03g145340 Amaranthus hybridus HOM05D004344 ORTHO05D006026 4.2e-100 369.4 480 50.8
Aqoxy7G02851 Aquilegia oxysepala HOM05D004344 ORTHO05D006026 7.2e-100 368.6 478 52.5
VMungo1215G1933 Vigna mungo HOM05D004344 ORTHO05D006026 2.7e-99 366.7 496 49.8
SGA_v2.0_scaffold46G17397 Striga asiatica HOM05D004344 ORTHO05D006026 6.1e-99 365.5 522 47.3
unitig_899.g14946 Utricularia gibba HOM05D004344 ORTHO05D006026 1.0e-98 364.8 531 46.1
Cfa004033 Carpinus fangiana HOM05D004344 ORTHO05D006026 2.3e-98 363.6 343 60.9
THA.LOC104827210 Tarenaya hassleriana HOM05D004344 ORTHO05D006026 2.0e-97 360.5 496 47.8
HanXRQChr14g0449061 Helianthus annuus HOM05D004344 ORTHO05D006026 8.3e-96 355.1 464 47.0
CDE04G1072 Ceratophyllum demersum HOM05D004344 ORTHO05D006026 3.1e-95 353.2 465 53.5
AUR62001915 Chenopodium quinoa HOM05D004344 ORTHO05D006026 4.5e-94 349.4 486 49.0
ECA238G4385 Erigeron canadensis HOM05D004344 ORTHO05D006026 8.5e-93 345.1 464 47.8
Duzib147G0141 Durio zibethinus HOM05D004344 ORTHO05D006026 2.5e-92 343.6 487 49.5
Migut.H00422 Erythranthe guttata HOM05D004344 ORTHO05D006026 2.5e-92 343.6 520 44.8
arahy.Tifrunner.gnm1.ann1.KW6QS2 Arachis hypogaea HOM05D004344 ORTHO05D006026 7.2e-92 342.0 503 45.3
Psat2g166640 Pisum sativum HOM05D004344 ORTHO05D006026 2.1e-91 340.5 481 49.9
arahy.Tifrunner.gnm1.ann1.7M3CIR Arachis hypogaea HOM05D004344 ORTHO05D006026 8.0e-91 338.6 500 46.0
arahy.Tifrunner.gnm1.ann1.EE0YL2 Arachis hypogaea HOM05D004344 ORTHO05D006026 8.0e-91 338.6 478 47.5
RcHm_v2.0_Chr2g0117021 Rosa chinensis HOM05D004344 ORTHO05D006026 5.2e-90 335.9 340 57.1
Thecc.01G058600 Theobroma cacao HOM05D004344 ORTHO05D006026 3.4e-89 333.2 496 49.2
EL10Ac6g15730 Beta vulgaris HOM05D004344 ORTHO05D006026 5.7e-89 332.4 484 45.9
Nn5g30338 Nelumbo nucifera HOM05D004344 ORTHO05D006026 2.2e-88 330.5 330 57.0
Gohir.A11G193200 Gossypium hirsutum HOM05D004344 ORTHO05D006026 3.1e-87 326.6 498 48.0
Gohir.D11G200300 Gossypium hirsutum HOM05D004344 ORTHO05D006026 9.1e-87 325.1 492 48.0
Gorai.007G214600 Gossypium raimondii HOM05D004344 ORTHO05D006026 1.2e-86 324.7 493 48.3
Lj2g0014817 Lotus japonicus HOM05D004344 ORTHO05D006026 2.7e-86 323.6 482 47.3
HPP92_025047 Vanilla planifolia HOM05D004344 ORTHO05D006026 2.1e-83 313.9 476 51.1
Aa31LG1G15620 Aethionema arabicum HOM05D004344 ORTHO05D006026 1.4e-82 311.2 492 45.1
Os01g0868300 Oryza sativa ssp. japonica HOM05D004344 ORTHO05D006026 1.8e-82 310.8 479 46.1
AL8G44260 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 1.2e-81 308.1 481 44.7
C07p24670 Brassica napus HOM05D004344 ORTHO05D006026 1.2e-81 308.1 493 42.8
BolC7t42987H Brassica oleracea HOM05D004344 ORTHO05D006026 1.2e-81 308.1 493 42.8
AUR62003893 Chenopodium quinoa HOM05D004344 ORTHO05D006026 2.0e-81 307.4 476 42.6
AT5G67100 Arabidopsis thaliana HOM05D004344 ORTHO05D006026 2.6e-81 307.0 491 43.4
CARHR280550 Cardamine hirsuta HOM05D004344 ORTHO05D006026 4.4e-81 306.2 496 41.3
Thhalv10003515m.g Eutrema salsugineum HOM05D004344 ORTHO05D006026 7.5e-81 305.4 488 41.8
Sp2g29580 Schrenkiella parvula HOM05D004344 ORTHO05D006026 7.5e-81 305.4 491 42.4
Medtr5g017070 Medicago truncatula HOM05D004344 ORTHO05D006026 9.8e-81 305.1 486 44.2
ATR0584G066 Amborella trichopoda HOM05D004344 ORTHO05D006026 2.2e-80 303.9 481 47.2
BraA07t29411Z Brassica rapa HOM05D004344 ORTHO05D006026 2.2e-80 303.9 492 41.9
SHI09544 Sapria himalayana HOM05D004344 ORTHO05D006026 1.8e-79 300.8 479 43.0
A07p16860 Brassica napus HOM05D004344 ORTHO05D006026 3.2e-79 300.1 498 42.2
BcaC06g34790 Brassica carinata HOM05D004344 ORTHO05D006026 3.5e-78 296.6 492 41.7
Zm00001eb146610 Zea mays HOM05D004344 ORTHO05D006026 3.5e-78 296.6 476 42.2
VMungo0464G2085 Vigna mungo HOM05D004344 ORTHO05D006026 5.2e-74 282.7 481 42.0
Carub.0008s0466 Capsella rubella HOM05D004344 ORTHO05D006026 7.5e-73 278.9 485 42.5
TPR.G16152 Trifolium pratense HOM05D004344 ORTHO05D006026 2.7e-70 270.4 496 39.5
AL8G20700 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 5.6e-68 262.7 465 41.3
MD02G1174200 Malus domestica HOM05D004344 ORTHO05D006026 1.1e-63 248.4 222 59.0
COL.COLO4_11441 Corchorus olitorius HOM05D004344 ORTHO05D006026 1.5e-60 238.0 518 37.5
SEGI_19753 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 2.5e-60 237.3 487 40.9
Pp3c1_21120 Physcomitrium patens HOM05D004344 ORTHO05D006026 2.0e-57 227.6 483 35.6
BcaB02g09958 Brassica carinata HOM05D004344 ORTHO05D006026 5.4e-55 219.5 412 40.0
SEGI_41015 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 2.1e-54 217.6 463 40.6
Mapoly0074s0003 Marchantia polymorpha HOM05D004344 ORTHO05D006026 1.1e-50 205.3 501 32.5
Carub.0008s2741 Capsella rubella HOM05D004344 ORTHO05D006026 4.0e-50 203.4 338 39.9
BcaC03g17194 Brassica carinata HOM05D004344 ORTHO05D006026 1.6e-46 191.4 483 34.6
C02p51210 Brassica napus HOM05D004344 ORTHO05D006026 1.6e-46 191.4 483 34.6
BolC2t11212H Brassica oleracea HOM05D004344 ORTHO05D006026 2.1e-46 191.0 483 34.6
SMO144G0147 Selaginella moellendorffii HOM05D004344 ORTHO05D006026 2.1e-46 191.0 466 33.5
AagrBONN_evm.TU.Sc2ySwM_344.2703__2704 Anthoceros agrestis HOM05D004344 ORTHO05D006026 5.6e-44 183.0 487 34.3
AL74U10010 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 1.4e-39 168.3 390 36.2
CARHR066690 Cardamine hirsuta HOM05D004344 ORTHO05D006026 4.6e-38 163.3 160 53.1
Hma1.2p1_0017F.1_g011500 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 5.6e-36 156.4 86 88.4
A02p33280 Brassica napus HOM05D004344 ORTHO05D006026 4.0e-34 150.2 249 40.6
AL8G22110 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 5.3e-34 149.8 337 36.2
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 5.3e-34 149.8 169 53.3
BraA02t08352Z Brassica rapa HOM05D004344 ORTHO05D006026 9.0e-34 149.1 242 40.9
MD02G1174100 Malus domestica HOM05D004344 ORTHO05D006026 3.2e-31 140.6 98 74.5
AagrBONN_evm.TU.Sc2ySwM_344.2706 Anthoceros agrestis HOM05D004344 ORTHO05D006026 5.5e-23 113.2 127 47.2
Lsat_1_v5_gn_4_154100 Lactuca sativa HOM05D002445 ORTHO05D002690 7.1e-23 112.8 156 46.8
CBR_g30807 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-19 100.9 641 26.1
PRCOL_00001322 Prasinoderma coloniale HOM05D004344 ORTHO05D006026 4.5e-17 93.6 409 29.3
AagrBONN_evm.TU.Sc2ySwM_340.1626 Anthoceros agrestis HOM05D004344 ORTHO05D006026 1.0e-16 92.4 128 41.4
MCO16G420 Micromonas commoda HOM05D004344 ORTHO05D006026 8.2e-11 72.8 531 24.1
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.8e-10 71.6 90 45.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 6.9e-10 69.7 69 53.6
Lsat_1_v5_gn_5_12941 Lactuca sativa HOM05D004344 ORTHO05D232207 2.2e-08 64.7 81 44.4
RcHm_v2.0_Chr2g0109901 Rosa chinensis HOM05D004344 ORTHO05D006026 3.8e-08 63.9 64 53.1
FAN20G2552 Fragaria x ananassa HOM05D008915 ORTHO05D001690 9.4e-07 59.3 40 70.0


User provided reference genes

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