Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 3.4e-201 704.9 384 100.0
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.3e-107 391.7 406 59.6
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.8e-106 390.2 401 61.6
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 6.4e-99 365.2 408 59.8
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 3.0e-88 329.7 400 49.8
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 7.5e-84 315.1 504 43.8
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 4.9e-83 312.4 422 50.9
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 4.1e-82 309.3 405 51.4
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 2.1e-81 307.0 411 51.3
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 6.2e-78 295.4 403 51.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.4e-77 294.3 392 50.8
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 5.2e-77 292.4 413 49.9
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 3.4e-76 289.7 396 51.3
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 3.8e-75 286.2 403 48.1
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 4.9e-75 285.8 415 44.6
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.1e-73 280.4 386 44.6
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 5.2e-69 265.8 404 45.8
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 5.8e-68 262.3 401 40.1
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.2e-67 260.4 408 48.3
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.4e-66 257.7 434 46.1
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 1.4e-66 257.7 404 44.3
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 3.2e-66 256.5 403 41.9
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 4.2e-66 256.1 405 44.9
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 1.6e-65 254.2 446 43.7
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 5.1e-64 249.2 397 44.6
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-62 244.2 317 51.4
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.6e-62 244.2 399 47.1
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 2.8e-62 243.4 472 44.1
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 4.8e-62 242.7 408 48.5
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.1e-61 241.5 425 44.5
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 4.0e-61 239.6 437 42.6
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 5.3e-61 239.2 446 42.2
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 9.0e-61 238.4 406 43.8
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 2.6e-60 236.9 402 42.3
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.8e-59 233.0 283 54.8
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 7.1e-58 228.8 403 39.5
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 9.3e-58 228.4 384 46.6
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 9.3e-58 228.4 408 42.6
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-53 214.9 384 40.9
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 6.9e-53 212.2 434 41.0
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 1.5e-52 211.1 411 44.3
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 3.4e-52 209.9 460 42.0
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 7.6e-52 208.8 292 52.7
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 6.4e-51 205.7 404 40.6
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 4.2e-50 203.0 423 40.2
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 4.2e-50 203.0 405 41.7
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 8.7e-48 195.3 392 41.3
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.1e-45 188.3 422 39.1
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.4e-45 188.0 410 40.2
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.8e-45 187.6 410 38.3
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 4.0e-45 186.4 437 37.1
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 3.4e-44 183.3 418 38.3
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.3e-43 181.4 449 37.6
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 3.2e-42 176.8 279 48.0
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.2e-41 174.9 426 39.4
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 6.0e-41 172.6 411 39.9
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 1.8e-40 171.0 408 35.5
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 1.1e-39 168.3 440 35.5
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 2.5e-39 167.2 436 36.7
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 2.5e-39 167.2 249 50.6
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 2.5e-39 167.2 412 39.1
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 4.3e-39 166.4 414 37.2
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 9.6e-39 165.2 404 37.4
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.8e-37 161.0 407 37.6
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 5.3e-37 159.5 373 39.1
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 2.6e-36 157.1 459 34.4
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 4.5e-36 156.4 424 33.7
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.4e-34 151.4 261 43.3
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 3.2e-34 150.2 406 35.0
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 3.2e-34 150.2 453 33.6
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.1e-33 147.5 297 35.7
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 3.6e-33 146.7 552 29.2
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 4.6e-33 146.4 401 36.9
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.5e-31 140.6 224 44.2
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 4.3e-31 139.8 309 36.2
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 5.7e-31 139.4 233 42.1
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 3.7e-30 136.7 474 30.8
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 6.3e-30 136.0 351 35.6
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 1.5e-28 131.3 400 33.2
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.5e-28 131.3 432 29.4
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.7e-27 127.9 416 33.4
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 1.1e-26 125.2 433 33.3
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 4.2e-26 123.2 413 33.9
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 4.2e-26 123.2 414 33.6
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 7.2e-26 122.5 433 31.4
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 9.4e-26 122.1 480 29.6
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 6.1e-25 119.4 402 35.3
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 2.3e-24 117.5 428 32.0
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 3.0e-24 117.1 422 31.3
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 6.7e-24 115.9 383 30.3
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 8.8e-24 115.5 432 32.2
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 6.3e-22 109.4 427 30.4
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 1.4e-21 108.2 424 30.0
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 4.1e-21 106.7 450 29.6
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 2.6e-20 104.0 449 29.2
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 7.2e-18 95.9 89 67.4
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.3e-16 90.9 88 65.9
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 2.6e-12 77.4 431 26.9
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.5e-10 70.9 86 46.5
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.5e-10 70.9 86 46.5
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 5.5e-10 69.7 96 42.7
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 8.0e-09 65.9 439 24.8
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.3e-08 64.3 46 67.4
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.3e-08 64.3 46 67.4
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 2.2e-06 57.8 437 25.4


User provided reference genes

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