Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 2582.4 1271 100.0
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 2175.2 1272 83.7
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 2170.2 1277 83.6
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 2128.6 1289 82.1
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 2120.5 1279 81.5
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 2076.2 1279 80.5
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 2043.5 1276 78.4
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 2024.6 1277 77.5
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 2016.5 1274 77.6
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 2010.7 1274 77.8
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 2010.3 1283 76.8
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 2001.1 1376 72.0
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1998.4 1275 76.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1997.6 1274 77.1
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1993.8 1273 76.2
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1985.3 1273 76.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1981.5 1245 78.7
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1980.3 1281 76.1
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1975.7 1273 75.6
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1975.3 1285 76.7
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1974.9 1277 76.8
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1973.7 1280 76.7
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1972.2 1277 75.3
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1965.3 1281 75.4
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1962.2 1279 75.7
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1961.0 1274 74.5
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1960.7 1277 76.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1958.0 1280 75.2
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1954.9 1271 74.0
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1949.5 1241 78.2
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1946.8 1271 73.9
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1935.2 1279 74.3
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1930.2 1273 72.9
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1926.4 1276 73.9
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1920.6 1277 73.2
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1917.1 1282 72.5
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1916.0 1276 73.0
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1914.0 1275 73.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1911.7 1280 73.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1904.4 1282 73.6
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1899.0 1275 72.9
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1898.2 1275 73.0
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1893.6 1275 73.0
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1888.2 1274 72.0
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1888.2 1277 72.8
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1886.3 1282 71.9
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1884.4 1282 71.3
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1884.0 1301 71.5
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1883.2 1272 72.9
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1874.4 1274 72.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1869.4 1279 70.5
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1867.0 1291 71.3
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1866.7 1279 70.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1863.2 1279 70.7
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1862.0 1274 71.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1859.7 1279 70.7
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1853.2 1275 71.4
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1845.5 1279 70.1
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1840.9 1355 66.7
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1831.6 1365 68.3
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1830.5 1273 70.9
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1823.9 1183 75.6
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1815.8 1279 71.3
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1801.9 1275 69.2
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1781.9 1282 69.2
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1772.3 1212 71.5
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1770.0 1272 69.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1768.8 1277 67.3
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1768.8 1190 74.6
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1767.7 1277 67.3
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1759.2 1277 67.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1753.4 1276 67.6
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1749.9 1279 67.6
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1741.5 1279 67.3
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1741.5 1283 67.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1740.7 1276 67.3
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1734.9 1289 66.9
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1734.5 1279 67.0
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1734.2 1281 67.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1730.3 1276 66.8
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1722.2 1287 66.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1720.7 1277 67.7
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1708.3 1045 80.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1707.2 1275 65.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1695.2 1273 66.3
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1693.7 1275 65.6
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1677.5 1043 78.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1649.4 1051 77.6
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1615.9 1281 63.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1592.8 1038 76.1
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1545.4 1266 60.7
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1505.3 1278 59.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1461.0 1273 60.3
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1430.2 1270 56.7
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1421.0 1180 61.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1395.2 831 81.9
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1373.6 1277 57.9
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1347.8 1215 56.7
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1293.1 777 80.1
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1279.2 942 67.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1262.7 877 68.8
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1261.9 808 78.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1236.1 831 72.4
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1227.6 762 78.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1210.7 833 70.5
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1195.6 943 64.4
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1157.9 1325 48.9
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1145.2 1197 49.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 0.0e+00 1138.6 767 74.2
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1137.5 943 62.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1124.0 1290 47.7
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1118.6 1334 47.4
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1090.9 1326 46.8
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.1e-308 1062.8 1152 50.1
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.8e-306 1054.7 693 73.3
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 5.7e-237 825.5 554 71.3
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 4.8e-236 822.4 1463 36.4
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.8e-235 820.5 624 66.2
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 3.8e-225 786.2 501 74.1
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.5e-225 785.0 503 75.7
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.7e-210 735.3 614 57.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.1e-207 727.2 470 79.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.3e-145 521.9 401 67.8
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 2.6e-141 507.7 322 78.9
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 7.6e-141 506.1 365 72.6
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 6.5e-132 476.5 333 72.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 6.1e-106 390.2 1412 27.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.7e-90 337.4 1240 25.9
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 8.9e-81 306.6 258 60.5
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 4.9e-55 221.1 150 71.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.9e-52 211.5 244 49.2
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 2.6e-48 198.7 129 76.7
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.7e-31 142.9 98 74.5
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.6e-26 126.3 78 73.1
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 6.5e-15 87.8 46 91.3
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.1e-14 87.0 68 57.4
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 8.8e-12 77.4 50 72.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.1e-11 77.0 53 69.8
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.5e-11 75.9 53 67.9
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.5e-11 75.9 95 41.1
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 5.7e-11 74.7 71 52.1
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 9.7e-11 73.9 59 66.1
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.7e-10 73.2 50 70.0
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.8e-09 69.7 48 68.8
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 3.1e-09 68.9 48 68.8
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 3.1e-09 68.9 48 68.8
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 3.1e-09 68.9 48 68.8
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 3.1e-09 68.9 48 68.8
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 3.1e-09 68.9 48 68.8
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 4.1e-09 68.6 48 68.8
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 4.1e-09 68.6 48 68.8
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.2e-08 67.0 152 28.9
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.2e-08 67.0 95 38.9
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.5e-08 66.6 80 48.8
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 5.9e-08 64.7 125 36.0
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.1e-06 60.5 118 32.2
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.4e-06 60.1 118 33.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.9e-06 59.7 187 29.9
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 3.2e-06 58.9 181 28.2
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 3.2e-06 58.9 118 32.2
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 4.2e-06 58.5 50 58.0
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 4.2e-06 58.5 96 36.5
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-06 58.2 86 34.9
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 9.4e-06 57.4 167 28.1


User provided reference genes

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