Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 3.6e-259 897.9 514 100.0
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 5.1e-221 771.2 504 86.9
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 2.0e-201 706.1 520 78.7
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 2.2e-200 702.6 518 78.4
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.3e-195 686.8 515 78.1
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.6e-190 669.8 517 76.6
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.8e-189 666.4 518 77.0
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 2.4e-186 656.0 519 74.4
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.2e-185 653.7 517 72.9
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 3.3e-183 645.6 514 73.3
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 4.4e-180 635.2 532 70.5
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 3.2e-178 629.0 515 70.9
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 2.0e-177 626.3 519 71.5
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 6.0e-177 624.8 519 69.7
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.3e-176 623.6 528 70.8
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 6.6e-176 621.3 517 68.9
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.1e-175 620.5 518 70.3
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 6.8e-173 611.3 523 72.1
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 8.9e-173 610.9 521 70.2
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.5e-172 610.1 522 66.9
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 9.8e-172 607.4 516 69.4
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.3e-171 607.1 522 66.9
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 6.4e-171 604.7 513 69.2
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.2e-170 602.4 516 68.0
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 5.4e-170 601.7 537 68.2
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 5.4e-170 601.7 523 67.3
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 7.1e-170 601.3 521 71.0
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 9.2e-170 600.9 521 70.8
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 1.2e-169 600.5 512 68.0
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.2e-169 600.5 519 67.8
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 2.1e-169 599.7 519 71.9
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 4.6e-169 598.6 537 67.6
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 6.0e-169 598.2 523 71.1
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 6.6e-168 594.7 516 67.6
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 4.3e-167 592.0 521 66.4
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 2.1e-166 589.7 511 68.3
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 2.8e-166 589.3 402 78.4
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.7e-166 588.6 522 67.2
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 6.2e-166 588.2 435 75.9
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.9e-164 580.9 510 68.0
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 2.9e-163 579.3 439 74.5
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.9e-163 579.3 510 69.6
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.9e-162 576.6 537 63.3
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 2.1e-161 573.2 517 65.2
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 1.0e-160 570.9 493 67.7
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 5.1e-160 568.5 529 68.2
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.5e-159 567.0 624 52.9
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 9.6e-159 564.3 402 76.1
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 1.6e-158 563.5 514 65.8
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.1e-157 560.8 558 64.3
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 1.8e-157 560.1 511 67.3
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.4e-157 559.7 520 62.3
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 1.5e-156 557.0 497 66.2
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.0e-156 556.6 518 63.3
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 2.6e-156 556.2 496 65.5
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.7e-155 553.5 380 79.2
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 6.4e-155 551.6 500 65.4
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.9e-154 550.1 537 60.3
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 5.4e-154 548.5 436 70.2
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 7.1e-154 548.1 521 62.8
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 2.7e-153 546.2 497 66.0
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 4.6e-153 545.4 398 73.9
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.7e-152 543.5 521 62.2
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 1.7e-152 543.5 510 63.9
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 3.0e-152 542.7 435 69.7
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 7.3e-151 538.1 516 60.5
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 1.1e-149 534.3 512 63.9
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 4.0e-149 532.3 517 63.2
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 5.3e-149 531.9 492 60.6
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.2e-148 530.8 524 65.5
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.5e-148 530.4 531 61.2
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 3.4e-148 529.3 518 60.8
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 9.9e-148 527.7 435 70.3
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 3.2e-146 522.7 519 62.4
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 6.0e-145 518.5 517 62.7
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.0e-144 517.7 517 57.8
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.3e-144 517.3 516 63.8
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 2.3e-144 516.5 440 69.1
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 3.0e-144 516.2 534 60.7
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 4.3e-143 512.3 527 62.8
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 4.3e-143 512.3 499 62.1
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 7.3e-143 511.5 557 58.5
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.3e-142 510.8 398 70.6
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 5.8e-140 501.9 525 58.5
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.9e-136 489.2 515 54.6
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 5.6e-135 485.3 539 54.0
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.9e-133 478.4 409 63.6
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 4.9e-131 472.2 458 63.8
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 6.5e-131 471.9 519 56.8
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 6.5e-131 471.9 477 61.4
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.0e-128 464.5 529 56.1
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 6.7e-128 461.8 497 64.2
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 1.5e-127 460.7 509 56.2
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 2.5e-127 459.9 509 57.2
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 2.5e-127 459.9 508 58.3
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 3.3e-127 459.5 434 64.3
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 7.4e-127 458.4 519 53.8
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 9.6e-127 458.0 507 58.0
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 9.6e-127 458.0 478 57.1
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 1.6e-126 457.2 395 66.3
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 1.5e-124 450.7 508 57.5
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 2.2e-123 446.8 504 57.7
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 6.5e-123 445.3 515 56.9
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.2e-122 443.0 383 62.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 4.2e-122 442.6 386 64.2
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 5.5e-122 442.2 504 57.7
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 7.1e-122 441.8 515 57.1
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 9.3e-122 441.4 504 57.9
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 4.6e-121 439.1 503 58.8
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 8.7e-120 434.9 488 53.1
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 4.3e-119 432.6 410 59.3
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 7.4e-119 431.8 523 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 2.3e-112 410.2 431 58.9
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.8e-107 392.9 452 54.2
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 1.4e-106 391.0 351 67.0
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 7.9e-105 385.2 457 53.0
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 8.8e-96 355.1 285 74.0
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 5.7e-87 325.9 261 60.5
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 1.4e-85 321.2 436 49.5
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 2.2e-83 313.9 550 43.3
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.9e-82 310.8 186 79.6
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 3.1e-64 250.4 554 37.4
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 1.0e-59 235.3 466 39.3
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.7e-51 208.0 223 49.8
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 4.0e-48 196.8 278 40.6
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 4.0e-48 196.8 410 33.7
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 4.7e-41 173.3 254 39.8
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 5.4e-29 133.3 573 24.4
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 9.9e-23 112.5 133 45.9
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 5.6e-18 96.7 84 56.0
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 2.1e-17 94.7 84 54.8
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 2.8e-17 94.4 84 56.0
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 1.1e-13 82.4 164 34.1
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 1.6e-12 78.6 163 34.4
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 3.0e-11 74.3 133 35.3
Oeu020857.1 Olea europaea HOM05D005639 ORTHO05D290761 1.9e-10 71.6 147 48.3
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 5.3e-08 63.5 118 33.9
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 5.9e-07 60.1 117 34.2
Duzib235G0476 Durio zibethinus HOM05D005639 ORTHO05D007234 2.2e-06 58.2 115 42.6
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 5.0e-06 57.0 254 31.5
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 5.0e-06 57.0 305 24.3
Lj6P800T11 Lonicera japonica HOM05D000453 ORTHO05D000387 6.5e-06 56.6 160 29.4
Sabra12G0054200 Salix brachista HOM05D000453 ORTHO05D000387 6.5e-06 56.6 117 33.3
SGA_v2.0_scaffold62G21510 Striga asiatica HOM05D002332 ORTHO05D002509 6.5e-06 56.6 117 35.9
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 6.5e-06 56.6 90 36.7


User provided reference genes

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