Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 2.2e-55 218.8 114 100.0
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 1.4e-38 162.9 92 91.3
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 1.2e-24 116.7 81 77.8
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 9.9e-24 113.6 71 81.7
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 9.9e-24 113.6 71 81.7
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 1.3e-23 113.2 71 80.3
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 1.7e-23 112.8 71 81.7
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 2.9e-23 112.1 71 78.9
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 2.9e-23 112.1 71 78.9
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 3.8e-23 111.7 71 78.9
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 4.9e-23 111.3 71 74.6
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 4.9e-23 111.3 71 74.6
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 4.9e-23 111.3 71 78.9
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 4.9e-23 111.3 71 78.9
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 4.9e-23 111.3 71 76.1
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 6.4e-23 110.9 71 81.7
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 6.4e-23 110.9 71 80.3
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 6.4e-23 110.9 69 82.6
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 6.4e-23 110.9 71 78.9
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 8.4e-23 110.5 80 72.5
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 8.4e-23 110.5 69 81.2
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 8.4e-23 110.5 71 78.9
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 8.4e-23 110.5 71 81.7
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.1e-22 110.2 70 75.7
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 1.1e-22 110.2 71 81.7
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 1.4e-22 109.8 69 76.8
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.4e-22 109.8 71 76.1
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 1.9e-22 109.4 69 75.4
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 1.9e-22 109.4 69 78.3
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.4e-22 109.0 71 77.5
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 2.4e-22 109.0 71 77.5
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 3.2e-22 108.6 71 78.9
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 3.2e-22 108.6 71 76.1
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 3.2e-22 108.6 71 77.5
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 4.2e-22 108.2 69 73.9
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 4.2e-22 108.2 71 77.5
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 5.4e-22 107.8 71 76.1
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 7.1e-22 107.5 71 76.1
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 9.3e-22 107.1 71 80.3
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 1.6e-21 106.3 71 78.9
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 2.7e-21 105.5 71 74.6
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 4.6e-21 104.8 72 73.6
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 6.0e-21 104.4 71 74.6
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 1.3e-20 103.2 69 73.9
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 1.7e-20 102.8 71 70.4
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.7e-20 102.8 71 74.6
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.7e-20 102.8 71 74.6
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 1.7e-20 102.8 71 74.6
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 1.7e-20 102.8 71 76.1
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 2.3e-20 102.4 69 72.5
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 3.0e-20 102.1 71 70.4
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 3.0e-20 102.1 71 70.4
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 5.1e-20 101.3 71 71.8
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 1.5e-19 99.8 71 71.8
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 1.5e-19 99.8 71 71.8
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.5e-19 99.8 71 71.8
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 2.5e-19 99.0 69 69.6
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 4.3e-19 98.2 71 70.4
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 5.6e-19 97.8 69 71.0
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 7.3e-19 97.4 69 66.7
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 7.3e-19 97.4 71 69.0
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 7.3e-19 97.4 71 69.0
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 9.6e-19 97.1 71 70.4
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 9.6e-19 97.1 70 70.0
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 1.3e-18 96.7 97 55.7
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 2.8e-18 95.5 72 65.3
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 3.6e-18 95.1 69 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 1.1e-17 93.6 69 60.9
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.1e-17 93.6 71 71.8
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.1e-17 93.6 71 71.8
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 1.1e-17 93.6 71 70.4
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 1.1e-17 93.6 71 63.4
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.1e-17 93.6 57 82.5
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.4e-17 93.2 59 81.4
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 1.4e-17 93.2 69 63.8
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 1.4e-17 93.2 69 65.2
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 3.1e-17 92.0 71 70.4
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 3.1e-17 92.0 59 79.7
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 5.3e-17 91.3 71 63.4
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 9.0e-17 90.5 70 65.7
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 9.0e-17 90.5 105 50.5
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 9.0e-17 90.5 69 62.3
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 9.0e-17 90.5 71 63.4
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.2e-16 90.1 59 78.0
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 1.5e-16 89.7 87 59.8
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 3.4e-16 88.6 66 65.2
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 5.8e-16 87.8 70 61.4
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 7.6e-16 87.4 105 49.5
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 7.6e-16 87.4 72 61.1
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 7.6e-16 87.4 74 63.5
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 7.6e-16 87.4 59 74.6
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.3e-15 86.7 69 55.1
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.7e-15 86.3 67 64.2
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.7e-15 86.3 67 64.2
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.7e-15 86.3 68 66.2
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 2.2e-15 85.9 67 68.7
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 2.2e-15 85.9 73 61.6
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 4.9e-15 84.7 73 58.9
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 6.4e-15 84.3 56 80.4
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 8.4e-15 84.0 60 73.3
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 2.4e-14 82.4 63 69.8
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 5.4e-14 81.3 63 66.7
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 7.1e-14 80.9 57 68.4
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 1.2e-13 80.1 71 54.9
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.6e-13 79.7 68 63.2
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 2.1e-13 79.3 59 69.5
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 3.5e-13 78.6 59 62.7
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 2.3e-12 75.9 68 48.5
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 3.0e-12 75.5 103 46.6
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 5.1e-12 74.7 61 67.2
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 1.1e-11 73.6 69 56.5
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 5.6e-11 71.2 73 53.4
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.6e-10 69.7 61 62.3
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 8.1e-10 67.4 83 48.2
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 2.0e-08 62.8 32 87.5
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 2.2e-07 59.3 54 53.7
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 7.1e-06 54.3 69 34.8
C09p35140 Brassica napus HOM05D007086 ORTHO05D008927 9.3e-06 53.9 64 45.3
BolC9t56360H Brassica oleracea HOM05D007086 ORTHO05D008927 9.3e-06 53.9 64 45.3


User provided reference genes

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