Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 3495.7 1829 100.0
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2345.9 1749 70.5
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2321.2 1711 70.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2289.2 1790 67.6
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2240.7 1788 66.2
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2226.8 1791 66.3
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2210.6 1849 64.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2209.5 1785 65.2
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2205.6 1742 67.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2202.6 1772 65.6
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2200.6 1786 65.8
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2197.5 1765 66.9
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2191.4 1791 65.4
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2190.6 1799 64.3
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2188.7 1787 65.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2185.2 1783 64.6
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2184.1 1790 64.9
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2161.3 1773 65.3
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2161.0 1791 64.9
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2157.9 1792 63.8
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2157.9 1749 64.7
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2155.6 1858 62.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2155.2 1785 63.8
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2145.2 1792 63.4
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2143.2 1687 67.6
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2140.5 1762 64.0
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2139.4 1748 64.6
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2129.4 1765 64.2
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2127.1 1752 64.4
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2116.7 1787 63.7
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2115.5 1775 63.5
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2104.3 1791 63.1
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2102.8 1766 63.5
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2102.0 1788 63.0
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2101.2 1785 63.6
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2100.9 1751 63.6
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2095.1 1804 62.2
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2088.2 1822 62.0
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2088.2 1774 63.0
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2071.2 1788 62.1
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2070.4 1789 63.1
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2070.4 1831 61.6
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2069.3 1736 63.4
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2066.6 1789 63.1
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2062.3 1789 63.1
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2058.5 1780 61.5
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2051.9 1789 62.7
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2050.4 1475 72.4
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2049.6 1785 62.0
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2048.5 1761 62.9
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2048.1 1744 63.3
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2046.6 1662 64.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2044.2 1836 60.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2037.3 1802 61.9
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2016.1 1693 63.6
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2009.6 1672 63.2
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2005.7 1789 61.9
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1988.4 1805 59.4
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1987.6 1795 60.1
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1981.5 1746 60.4
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1977.2 1694 62.6
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1961.4 1774 60.9
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1961.0 1845 57.9
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1959.1 1807 58.7
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1958.0 1841 59.7
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1957.6 1630 64.0
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1957.2 1847 57.8
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1953.7 1511 68.9
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1947.6 1835 57.6
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1942.9 1725 60.3
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1935.2 1812 58.1
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1934.8 1795 58.4
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1934.8 1857 57.2
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1931.8 1851 57.1
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1931.8 1851 57.1
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1927.1 1792 59.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1918.7 1810 57.5
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1917.9 1837 57.4
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1913.3 1849 57.2
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1913.3 1849 57.2
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1902.1 1581 63.8
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1892.5 1439 68.7
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1880.5 1816 56.4
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1877.8 1479 66.5
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1867.0 1537 64.2
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1853.6 1854 56.7
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1850.5 1860 55.5
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1815.4 1678 59.4
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1752.3 1683 56.9
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1668.3 1338 65.6
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1628.6 1540 57.8
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1585.5 1745 52.0
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1561.2 1578 54.8
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1453.7 1365 57.9
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1390.9 1794 45.3
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1323.9 1828 43.0
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1290.0 1791 43.9
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1279.2 1752 43.8
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1260.0 937 71.7
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1221.8 1207 57.3
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1192.9 995 62.7
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 6.6e-303 1045.0 961 58.4
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.7e-288 996.5 1089 51.3
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.2e-282 976.9 1510 39.7
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.1e-276 958.0 913 57.9
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.4e-249 867.8 786 58.7
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 9.3e-241 838.6 640 66.1
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.2e-213 747.7 650 61.4
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.8e-198 695.7 887 46.0
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 1.7e-178 631.7 511 65.4
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 2.5e-169 601.3 558 62.9
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-166 592.4 730 46.6
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 4.9e-165 587.0 543 60.2
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.1e-154 550.4 505 62.4
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 2.4e-148 531.6 463 60.5
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 1.6e-147 528.9 437 63.2
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.6e-137 493.8 508 54.3
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.3e-125 456.1 475 56.0
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.4e-124 452.6 489 55.4
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.7e-112 411.4 420 54.5
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 8.2e-112 410.2 340 63.5
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.2e-94 353.2 291 62.9
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.2e-92 345.1 354 53.4
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.6e-91 342.8 323 56.7
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.7e-91 341.3 281 63.0
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.5e-89 336.3 424 47.4
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 6.1e-83 314.3 369 52.6
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 2.0e-70 272.7 1579 23.2
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 5.6e-60 238.0 271 48.7
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.0e-45 190.7 221 48.4
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 7.3e-44 184.5 244 44.7
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 7.3e-44 184.5 192 55.2
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.0e-41 176.4 420 31.9
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 8.4e-40 171.0 120 69.2
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 7.1e-39 167.9 164 54.9
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.6e-38 166.8 417 33.6
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 6.0e-38 164.9 160 55.0
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 7.9e-30 137.9 117 58.1
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 3.3e-28 132.5 96 65.6
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.4e-26 127.1 100 66.0
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 3.1e-26 125.9 128 53.9
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.6e-25 122.9 74 82.4
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 4.5e-25 122.1 94 62.8
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 2.9e-24 119.4 95 61.1
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.7e-22 112.8 90 64.4
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 1.0e-21 110.9 88 64.8
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.0e-21 110.9 78 67.9
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 1.0e-21 110.9 89 64.0
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.5e-20 107.1 194 39.2
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.6e-19 103.6 78 66.7
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 9.0e-18 97.8 78 60.3
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.2e-17 97.4 74 67.6
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 2.6e-17 96.3 71 67.6
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 3.4e-17 95.9 71 67.6
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.5e-17 95.5 59 81.4
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.3e-16 94.0 59 79.7
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.3e-16 94.0 59 76.3
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 6.5e-16 91.7 112 46.4
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 3.0e-13 82.8 73 56.2
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 6.7e-13 81.6 90 47.8
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.3e-12 79.0 61 67.2
DCAR_031838 Daucus carota HOM05D003939 ORTHO05D175089 1.3e-11 77.4 39 89.7
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.6e-11 77.0 109 44.0
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 8.2e-11 74.7 249 27.7
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 1.8e-10 73.6 68 57.4
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 4.1e-10 72.4 53 66.0
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 1.2e-09 70.9 81 49.4
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 1.2e-09 70.9 93 43.0
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.7e-08 67.0 65 49.2
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.7e-08 67.0 65 49.2
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.5e-08 65.1 65 47.7
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.9e-07 63.5 175 26.9
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 7.2e-07 61.6 90 41.1
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 7.2e-07 61.6 73 46.6


User provided reference genes

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