Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 0.0e+00 1181.0 600 100.0
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 2.6e-285 984.9 673 76.7
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.9e-283 978.8 630 80.0
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 1.9e-283 978.8 674 76.0
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 1.6e-282 975.7 675 74.5
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 6.1e-282 973.8 675 75.3
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 1.0e-281 973.0 674 75.5
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.3e-281 971.8 674 76.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 6.7e-281 970.3 672 74.3
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 6.7e-281 970.3 670 75.4
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 2.6e-280 968.4 674 74.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 3.3e-280 968.0 676 75.1
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 4.4e-280 967.6 675 75.0
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 1.3e-279 966.1 673 74.4
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 4.8e-279 964.1 674 74.5
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 1.1e-278 963.0 670 74.8
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 4.1e-278 961.1 671 74.2
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 7.0e-278 960.3 671 74.2
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 9.1e-278 959.9 674 74.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 1.2e-277 959.5 674 73.7
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 1.6e-277 959.1 671 74.2
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 2.2e-276 955.3 674 73.4
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.9e-276 954.9 675 73.9
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 8.5e-276 953.4 675 73.8
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.5e-275 952.6 671 73.6
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 2.5e-275 951.8 676 74.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 1.6e-274 949.1 670 73.7
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 2.7e-274 948.3 675 73.3
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 2.7e-274 948.3 674 73.7
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.2e-272 943.0 680 72.4
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 1.5e-272 942.6 674 73.0
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 3.4e-272 941.4 676 72.9
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 7.5e-272 940.3 660 73.6
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 9.8e-272 939.9 674 72.4
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 9.8e-272 939.9 674 72.7
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 1.7e-271 939.1 682 72.0
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 8.3e-271 936.8 674 72.4
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.1e-270 936.4 674 72.3
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 5.4e-270 934.1 676 72.3
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 9.1e-270 933.3 674 72.4
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 1.6e-269 932.6 678 72.0
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 5.9e-269 930.6 678 71.8
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 5.9e-269 930.6 675 73.0
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 5.9e-269 930.6 647 73.3
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 5.9e-269 930.6 647 73.3
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 1.7e-268 929.1 664 72.1
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 2.3e-268 928.7 682 72.0
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 2.3e-268 928.7 673 71.3
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 1.1e-267 926.4 660 72.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 2.1e-266 922.2 665 72.6
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 6.1e-266 920.6 701 69.2
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 1.4e-265 919.5 674 71.7
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 5.2e-265 917.5 673 71.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.5e-264 916.0 644 73.4
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.3e-263 912.9 674 71.7
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.7e-263 912.5 696 70.7
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 2.2e-263 912.1 675 70.1
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 4.9e-263 911.0 716 67.9
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 4.1e-262 907.9 663 71.3
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 4.1e-262 907.9 675 69.6
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 5.4e-262 907.5 693 69.0
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 7.0e-262 907.1 674 69.7
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.2e-261 906.4 668 70.7
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 1.2e-261 906.4 674 69.6
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 2.0e-261 905.6 677 69.4
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 2.7e-261 905.2 674 69.3
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 5.9e-261 904.0 674 69.7
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 7.8e-261 903.7 667 70.6
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 1.7e-260 902.5 674 69.6
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 1.7e-260 902.5 684 69.2
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 3.8e-260 901.4 683 71.2
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.7e-258 894.4 685 68.5
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.6e-256 888.6 692 67.9
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 7.5e-256 887.1 727 67.0
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 9.2e-254 880.2 673 66.9
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.2e-253 879.8 758 64.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 2.0e-253 879.0 705 66.2
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.9e-252 874.8 636 71.2
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.9e-251 872.5 661 69.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 3.3e-251 871.7 641 69.7
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 4.3e-251 871.3 674 67.8
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 5.8e-248 860.9 645 67.6
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-247 859.8 697 67.6
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.1e-235 820.1 657 66.8
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.6e-229 799.7 663 63.3
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 5.6e-227 791.2 582 70.1
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.1e-226 789.3 675 64.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 5.2e-225 784.6 597 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 6.0e-221 771.2 646 61.5
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.0e-220 768.8 587 68.8
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.1e-219 766.9 660 61.1
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 2.1e-218 762.7 590 67.5
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 4.8e-218 761.5 654 64.1
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.2e-216 756.9 652 60.7
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 8.4e-215 750.7 666 58.7
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 6.7e-212 741.1 509 74.7
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 9.0e-209 730.7 643 64.2
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 9.7e-179 630.9 445 72.6
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.1e-165 586.6 666 48.5
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.1e-161 574.3 462 62.6
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 5.0e-151 538.9 306 87.3
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-142 511.1 540 53.0
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.6e-141 507.3 318 80.5
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.0e-140 504.6 644 45.5
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.1e-140 503.1 628 45.7
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 5.2e-140 502.3 307 81.4
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 8.0e-133 478.4 382 63.9
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 9.9e-123 444.9 272 82.4
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 8.3e-122 441.8 373 65.7
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.2e-121 438.3 272 83.1
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 2.1e-120 437.2 298 75.8
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.1e-118 431.4 272 81.6
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-101 374.4 614 41.2
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 4.6e-96 356.3 264 71.6
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.5e-86 323.9 216 76.9
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.4e-81 308.1 217 71.9
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-78 298.1 402 47.0
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.3e-66 258.5 176 73.3
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 2.2e-58 231.1 233 59.7
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 4.7e-56 223.4 221 58.4
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 4.1e-52 210.3 250 48.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-49 202.2 221 51.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.1e-49 202.2 104 89.4
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 4.9e-37 160.2 173 52.6
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.2e-32 145.6 86 87.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 9.8e-30 136.0 86 77.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.3e-29 135.6 444 31.5
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 6.0e-19 100.1 55 87.3
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.7e-18 98.6 68 76.5
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 1.7e-18 98.6 68 76.5
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 3.0e-18 97.8 327 29.4
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.0e-18 97.8 80 67.5
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.9e-18 97.4 82 67.1
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 5.6e-17 93.6 82 62.2
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 5.6e-17 93.6 113 52.2
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 5.8e-14 83.6 49 85.7
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 7.5e-14 83.2 49 85.7
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 2.4e-12 78.2 66 56.1
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.2e-12 77.8 66 63.6
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.1e-12 77.4 63 68.3
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.6e-10 70.1 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 5.6e-09 67.0 105 41.9
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.1e-08 65.1 67 49.3
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 4.4e-06 57.4 33 84.8
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 9.9e-06 56.2 36 72.2


User provided reference genes

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